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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.291 C 0.209 G 0.209 T 0.291 

MOTIF 1-AGTGTGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.2e-001
 0.813961 0.001796 0.181733 0.002509
 0.002509 0.001796 0.993185 0.002509
 0.002509 0.001796 0.240747 0.754947
 0.062199 0.031641 0.903650 0.002509
 0.062199 0.001796 0.061486 0.874519
 0.002509 0.001796 0.993185 0.002509
 0.993898 0.001796 0.001796 0.002509
 0.002509 0.993185 0.001796 0.002509

MOTIF 2-ATCGATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.7e-001
 0.896461 0.001480 0.099991 0.002067
 0.051244 0.001480 0.001480 0.945796
 0.002067 0.911673 0.001480 0.084780
 0.057209 0.050657 0.807355 0.084780
 0.847443 0.050657 0.050657 0.051244
 0.002067 0.001480 0.001480 0.994973
 0.871714 0.026068 0.100150 0.002067
 0.863005 0.050736 0.084192 0.002067

MOTIF 3-AAACAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 6.7e-001
 0.840141 0.079433 0.053204 0.027223
 0.843448 0.018203 0.005783 0.132567
 0.936914 0.003185 0.014862 0.045038
 0.001098 0.736839 0.026911 0.235152
 0.959038 0.000786 0.000786 0.039390
 0.970700 0.016601 0.011601 0.001098
 0.918923 0.053204 0.020380 0.007494
 0.036162 0.016601 0.020967 0.926270

MOTIF 4-AGWGTTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.825408 0.001280 0.171525 0.001788
 0.001788 0.001280 0.995144 0.001788
 0.415552 0.001280 0.043807 0.539361
 0.129506 0.214052 0.654655 0.001788
 0.245444 0.001280 0.001280 0.751996
 0.001788 0.001280 0.001280 0.995652
 0.001788 0.001280 0.995144 0.001788
 0.001788 0.001280 0.995144 0.001788

MOTIF 5-ATCAGCTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.0e+000
 0.857954 0.001036 0.001036 0.139975
 0.157018 0.001036 0.151121 0.690825
 0.001447 0.996071 0.001036 0.001447
 0.996482 0.001036 0.001036 0.001447
 0.099162 0.001036 0.863947 0.035856
 0.035856 0.961662 0.001036 0.001447
 0.035856 0.001036 0.222254 0.740855
 0.070376 0.015280 0.912898 0.001447

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/gcm2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_gcm2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	2.30 seconds
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