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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.299 C 0.201 G 0.201 T 0.299 

MOTIF 1-ATCAATTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.2e-001
 0.850520 0.094554 0.052722 0.002204
 0.002204 0.001486 0.001486 0.994824
 0.002204 0.994106 0.001486 0.002204
 0.726510 0.001486 0.218646 0.053357
 0.922494 0.052640 0.022662 0.002204
 0.002204 0.001486 0.103959 0.892351
 0.053357 0.001486 0.001486 0.943670
 0.062186 0.001486 0.934124 0.002204

MOTIF 2-GCAGCACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.061011 0.071877 0.865588 0.001524
 0.011052 0.951029 0.036396 0.001524
 0.783872 0.071877 0.071877 0.072373
 0.056167 0.001028 0.905914 0.036892
 0.008288 0.882943 0.036396 0.072373
 0.809367 0.143185 0.010556 0.036892
 0.001524 0.956267 0.001028 0.041182
 0.072488 0.001028 0.001028 0.925457

MOTIF 3-CAACACTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.027145 0.927400 0.018309 0.027145
 0.936236 0.018309 0.018309 0.027145
 0.936236 0.018309 0.018309 0.027145
 0.027145 0.927400 0.018309 0.027145
 0.936236 0.018309 0.018309 0.027145
 0.027145 0.927400 0.018309 0.027145
 0.027145 0.018309 0.018309 0.936236
 0.027145 0.018309 0.927400 0.027145

MOTIF 4-CAGCTGTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 9.5e-001
 0.003024 0.991913 0.002039 0.003024
 0.992897 0.002039 0.002039 0.003024
 0.003024 0.002039 0.991913 0.003024
 0.003024 0.991913 0.002039 0.003024
 0.003024 0.142421 0.002039 0.852516
 0.003024 0.002039 0.991913 0.003024
 0.073784 0.002039 0.002039 0.922137
 0.143405 0.142647 0.002039 0.711909

MOTIF 5-CGATRACK STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.088054 0.908837 0.001252 0.001857
 0.001857 0.001252 0.995034 0.001857
 0.779727 0.001252 0.174065 0.044956
 0.001857 0.044351 0.001252 0.952540
 0.391699 0.044351 0.475896 0.088054
 0.995639 0.001252 0.001252 0.001857
 0.001857 0.995034 0.001252 0.001857
 0.088193 0.001252 0.347160 0.563395

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/fu2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_fu2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	1.82 seconds
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