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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.244 C 0.256 G 0.256 T 0.244 

MOTIF 1-CAAGGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 187 P= 2.7e-004
 0.000280 0.776938 0.197059 0.025723
 0.923780 0.000293 0.067711 0.008216
 0.918226 0.018381 0.040234 0.023159
 0.016230 0.004569 0.922531 0.056670
 0.000280 0.000293 0.999148 0.000280
 0.044931 0.273999 0.051072 0.629998
 0.009179 0.921180 0.037343 0.032298
 0.702078 0.000293 0.257538 0.040091

MOTIF 2-CCGCCCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.001842 0.994387 0.001928 0.001842
 0.001842 0.994387 0.001928 0.001842
 0.001842 0.054205 0.837390 0.106563
 0.001842 0.972746 0.001928 0.023483
 0.001842 0.889666 0.106649 0.001842
 0.001842 0.679207 0.212388 0.106563
 0.994301 0.001928 0.001928 0.001842
 0.001842 0.994387 0.001928 0.001842

MOTIF 3-CACCCACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 5.0e-001
 0.001120 0.932946 0.001172 0.064763
 0.996536 0.001172 0.001172 0.001120
 0.001120 0.943153 0.001172 0.054556
 0.001120 0.853243 0.144517 0.001120
 0.001120 0.869200 0.001172 0.128508
 0.900763 0.001172 0.096945 0.001120
 0.001120 0.964818 0.032942 0.001120
 0.645625 0.001172 0.128560 0.224643

MOTIF 4-AACAGCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.0e-001
 0.909446 0.001581 0.001581 0.087391
 0.865880 0.001581 0.001581 0.130957
 0.001511 0.983847 0.001581 0.013061
 0.866575 0.087461 0.001581 0.044382
 0.087391 0.001581 0.866646 0.044382
 0.044382 0.848899 0.087461 0.019258
 0.087391 0.001581 0.001581 0.909446
 0.019258 0.001581 0.977649 0.001511

MOTIF 5-CGGGGGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.051260 0.945168 0.001827 0.001745
 0.150768 0.001827 0.845660 0.001745
 0.051260 0.001827 0.845979 0.100934
 0.001745 0.101015 0.845979 0.051260
 0.001745 0.001827 0.994683 0.001745
 0.001745 0.001827 0.945168 0.051260
 0.845898 0.101015 0.051341 0.001745
 0.945087 0.001827 0.051341 0.001745

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/ftz-f1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_ftz-f1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.92 seconds
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