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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.297 C 0.203 G 0.203 T 0.297 

MOTIF 1-ACGCACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.914732 0.082345 0.001185 0.001737
 0.001737 0.954826 0.041700 0.001737
 0.001737 0.001185 0.914181 0.082897
 0.042252 0.947076 0.001185 0.009486
 0.920474 0.001185 0.036089 0.042252
 0.001737 0.832496 0.001185 0.164581
 0.873956 0.001185 0.123121 0.001737
 0.001737 0.954826 0.001185 0.042252

MOTIF 2-AACAACAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 8.3e-001
 0.994278 0.001651 0.001651 0.002420
 0.826423 0.024427 0.001651 0.147499
 0.002420 0.993509 0.001651 0.002420
 0.881229 0.001651 0.001651 0.115469
 0.881229 0.001651 0.001651 0.115469
 0.002420 0.993509 0.001651 0.002420
 0.881229 0.058267 0.001651 0.058853
 0.994278 0.001651 0.001651 0.002420

MOTIF 3-AAATAAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 100 P= 8.8e-001
 0.850571 0.017270 0.037105 0.095055
 0.955876 0.009080 0.013474 0.021571
 0.874024 0.043875 0.043924 0.038177
 0.001303 0.013890 0.057895 0.926911
 0.938732 0.013474 0.016090 0.031704
 0.984393 0.012053 0.000889 0.002665
 0.832915 0.047858 0.005892 0.113335
 0.087067 0.629958 0.069481 0.213494

MOTIF 4-CCACCCGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.8e-001
 0.001638 0.995605 0.001118 0.001638
 0.039850 0.957394 0.001118 0.001638
 0.804944 0.192299 0.001118 0.001638
 0.039850 0.880970 0.001118 0.078062
 0.001638 0.880601 0.001118 0.116643
 0.231154 0.613120 0.001118 0.154608
 0.231031 0.077541 0.689789 0.001638
 0.078062 0.689666 0.077664 0.154608

MOTIF 5-AATGAGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 9.5e-001
 0.924733 0.043185 0.030798 0.001283
 0.856645 0.030798 0.081351 0.031206
 0.127368 0.015837 0.030798 0.825997
 0.001283 0.060817 0.936617 0.001283
 0.907102 0.000875 0.030798 0.061225
 0.005728 0.030798 0.872423 0.091051
 0.876986 0.030798 0.000875 0.091341
 0.213133 0.000875 0.784709 0.001283

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/foxo.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_foxo/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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