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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.289 C 0.211 G 0.211 T 0.289 

MOTIF 1-AACCGGTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 118 P= 3.1e-002
 0.771372 0.166187 0.025197 0.037244
 0.652310 0.000366 0.214246 0.133078
 0.178249 0.580265 0.000366 0.241119
 0.015047 0.716596 0.000366 0.267991
 0.267991 0.000366 0.716596 0.015047
 0.241119 0.000366 0.580265 0.178249
 0.133078 0.214246 0.000366 0.652310
 0.037244 0.025197 0.166187 0.771372

MOTIF 2-AGGGAGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.997121 0.000854 0.000854 0.001171
 0.001171 0.160619 0.752737 0.085472
 0.001171 0.000854 0.996804 0.001171
 0.198253 0.000854 0.743582 0.057312
 0.715512 0.000854 0.282463 0.001171
 0.001171 0.000854 0.940663 0.057312
 0.781125 0.216850 0.000854 0.001171
 0.141703 0.028924 0.743991 0.085382

MOTIF 3-GMKGCMKC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 9.3e-001
 0.012116 0.001263 0.922525 0.064097
 0.392174 0.510512 0.042794 0.054520
 0.060703 0.084527 0.427128 0.427643
 0.001733 0.001263 0.986675 0.010329
 0.010329 0.986675 0.001263 0.001733
 0.427643 0.427128 0.084527 0.060703
 0.054520 0.042794 0.510512 0.392174
 0.064097 0.922525 0.001263 0.012116

MOTIF 4-ACGCACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.993762 0.001850 0.001850 0.002538
 0.002538 0.993074 0.001850 0.002538
 0.002538 0.123712 0.871211 0.002538
 0.104856 0.890755 0.001850 0.002538
 0.932928 0.001850 0.001850 0.063371
 0.002538 0.967891 0.001850 0.027721
 0.687625 0.001850 0.307986 0.002538
 0.002538 0.967891 0.001850 0.027721

MOTIF 5-CATATAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.026291 0.928255 0.019164 0.026291
 0.935382 0.019164 0.019164 0.026291
 0.026291 0.019164 0.019164 0.935382
 0.935382 0.019164 0.019164 0.026291
 0.026291 0.019164 0.019164 0.935382
 0.935382 0.019164 0.019164 0.026291
 0.935382 0.019164 0.019164 0.026291
 0.026291 0.019164 0.928255 0.026291

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd85E.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_fd85E/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.88 seconds
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