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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.286 C 0.214 G 0.214 T 0.286 

MOTIF 1-AGTAAATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 196 P= 2.2e-005
 0.573922 0.024594 0.127146 0.274338
 0.206526 0.019387 0.773668 0.000418
 0.000418 0.257385 0.000314 0.741883
 0.993880 0.005388 0.000314 0.000418
 0.949496 0.017298 0.013195 0.020010
 0.930376 0.018269 0.000314 0.051041
 0.010582 0.328673 0.000314 0.660431
 0.985204 0.000314 0.000314 0.014168

MOTIF 2-CCCTCTTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 9.5e-002
 0.114031 0.663744 0.023319 0.198906
 0.023552 0.811933 0.068631 0.095883
 0.039188 0.859337 0.091178 0.010296
 0.159708 0.023319 0.023319 0.793654
 0.055536 0.933469 0.010063 0.000932
 0.114176 0.106896 0.100761 0.678167
 0.136869 0.104079 0.023319 0.735733
 0.055536 0.933469 0.000699 0.010296

MOTIF 3-CTRATYAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.141022 0.736426 0.001472 0.121080
 0.001963 0.001472 0.049165 0.947400
 0.464787 0.096858 0.388699 0.049656
 0.971285 0.001472 0.025280 0.001963
 0.001963 0.025280 0.001472 0.971285
 0.049656 0.388699 0.096858 0.464787
 0.947400 0.049165 0.001472 0.001963
 0.121080 0.001472 0.736426 0.141022

MOTIF 4-CAGCCAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.003684 0.989870 0.002763 0.003684
 0.990790 0.002763 0.002763 0.003684
 0.003684 0.002763 0.900501 0.093053
 0.003684 0.720898 0.002763 0.272655
 0.003684 0.810844 0.002763 0.182709
 0.990790 0.002763 0.002763 0.003684
 0.003684 0.002763 0.989870 0.003684
 0.003684 0.989870 0.002763 0.003684

MOTIF 5-AATGCATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.991562 0.002532 0.002532 0.003375
 0.991562 0.002532 0.002532 0.003375
 0.003375 0.002532 0.084414 0.909679
 0.003375 0.084414 0.908836 0.003375
 0.003375 0.908836 0.084414 0.003375
 0.827796 0.084414 0.084414 0.003375
 0.003375 0.002532 0.002532 0.991562
 0.991562 0.002532 0.002532 0.003375

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd64A.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_fd64A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.80 seconds
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