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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.341 C 0.159 G 0.159 T 0.341 

MOTIF 1-GCTTAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.030982 0.014473 0.923564 0.030982
 0.030982 0.923564 0.014473 0.030982
 0.030982 0.014473 0.014473 0.940073
 0.030982 0.014473 0.014473 0.940073
 0.940073 0.014473 0.014473 0.030982
 0.940073 0.014473 0.014473 0.030982
 0.940073 0.014473 0.014473 0.030982
 0.940073 0.014473 0.014473 0.030982

MOTIF 2-ATTTCCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 6.7e-001
 0.848560 0.032804 0.014011 0.104625
 0.065814 0.064871 0.000737 0.868578
 0.014851 0.000737 0.032804 0.951608
 0.033644 0.000737 0.010263 0.955356
 0.065814 0.774917 0.097561 0.061708
 0.033644 0.918701 0.014011 0.033644
 0.868371 0.129316 0.000737 0.001577
 0.162125 0.064974 0.759549 0.013352

MOTIF 3-AATGGGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001
 0.895129 0.000867 0.038631 0.065373
 0.943012 0.038631 0.016500 0.001857
 0.115512 0.016500 0.076516 0.791472
 0.003738 0.021215 0.973191 0.001857
 0.115512 0.000867 0.818248 0.065373
 0.001857 0.000867 0.937075 0.060201
 0.862650 0.021215 0.038631 0.077505
 0.943012 0.038631 0.000867 0.017490

MOTIF 4-AACATCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.823805 0.115225 0.001306 0.059664
 0.880856 0.058174 0.001306 0.059664
 0.002796 0.879183 0.115225 0.002796
 0.937724 0.058174 0.001306 0.002796
 0.059664 0.058174 0.001306 0.880856
 0.002796 0.855150 0.001306 0.140748
 0.002796 0.001306 0.001306 0.994592
 0.059756 0.001306 0.822223 0.116715

MOTIF 5-CGGTACTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.003740 0.914714 0.001747 0.079800
 0.079800 0.077807 0.762593 0.079800
 0.003740 0.001747 0.990774 0.003740
 0.003740 0.001747 0.001747 0.992766
 0.764341 0.001747 0.001747 0.232165
 0.003740 0.914714 0.001747 0.079800
 0.155860 0.153867 0.077807 0.612466
 0.764586 0.077807 0.001747 0.155860

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd59A.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_fd59A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n03.farnam.hpc.yale.internal
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FINALTIME:	1.51 seconds
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