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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.34 C 0.16 G 0.16 T 0.34 

MOTIF 1-GAATGGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.2e-001
 0.002454 0.001152 0.993941 0.002454
 0.924572 0.051132 0.001152 0.023144
 0.945262 0.051132 0.001152 0.002454
 0.052435 0.051132 0.151255 0.745178
 0.023144 0.151577 0.822825 0.002454
 0.002454 0.001152 0.993941 0.002454
 0.845220 0.051132 0.001152 0.102496
 0.745178 0.051132 0.101193 0.102496

MOTIF 2-AACTAAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 1.2e-001
 0.938853 0.000934 0.041451 0.018762
 0.996144 0.000934 0.000934 0.001989
 0.001989 0.818052 0.143240 0.036719
 0.001989 0.063533 0.021192 0.913286
 0.948958 0.041451 0.007602 0.001989
 0.914978 0.000934 0.082099 0.001989
 0.974071 0.000934 0.021192 0.003803
 0.108043 0.597360 0.163790 0.130807

MOTIF 3-ATATTTAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 154 P= 2.9e-001
 0.838171 0.133218 0.027468 0.001143
 0.001143 0.000537 0.000537 0.997783
 0.991509 0.006811 0.000537 0.001143
 0.001143 0.000537 0.000537 0.997783
 0.001143 0.086469 0.182298 0.730090
 0.035372 0.144799 0.014510 0.805320
 0.848695 0.026127 0.124034 0.001143
 0.030875 0.179792 0.079256 0.710077

MOTIF 4-ATCCACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.995824 0.001011 0.001011 0.002154
 0.133916 0.001011 0.001011 0.864062
 0.002154 0.994681 0.001011 0.002154
 0.002154 0.791657 0.001011 0.205178
 0.776244 0.088900 0.132703 0.002154
 0.002154 0.950807 0.001011 0.046028
 0.908077 0.088758 0.001011 0.002154
 0.582586 0.132703 0.194809 0.089902

MOTIF 5-ACATTTTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.940027 0.014518 0.014518 0.030936
 0.030936 0.923609 0.014518 0.030936
 0.940027 0.014518 0.014518 0.030936
 0.030936 0.014518 0.014518 0.940027
 0.030936 0.014518 0.014518 0.940027
 0.030936 0.014518 0.014518 0.940027
 0.030936 0.014518 0.014518 0.940027
 0.940027 0.014518 0.014518 0.030936

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd3F.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_fd3F/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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