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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.305 C 0.195 G 0.195 T 0.305 

MOTIF 1-TATTTGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 137 P= 4.2e-002
 0.000930 0.037051 0.000596 0.961423
 0.906548 0.021754 0.070768 0.000930
 0.000930 0.000596 0.021754 0.976720
 0.000930 0.000596 0.036181 0.962292
 0.022087 0.000596 0.000596 0.976720
 0.184483 0.000596 0.773510 0.041411
 0.000930 0.890248 0.025507 0.083316
 0.684552 0.125351 0.000596 0.189500

MOTIF 2-AAATGCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.644967 0.001637 0.059713 0.293682
 0.994173 0.001637 0.001637 0.002552
 0.994173 0.001637 0.001637 0.002552
 0.002552 0.001637 0.001637 0.994173
 0.002552 0.001637 0.993259 0.002552
 0.002552 0.993259 0.001637 0.002552
 0.586704 0.001637 0.234316 0.177343
 0.994173 0.001637 0.001637 0.002552

MOTIF 3-AAATATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 6.5e-001
 0.756470 0.001399 0.197195 0.044937
 0.840528 0.071195 0.086097 0.002181
 0.970207 0.001399 0.026213 0.002181
 0.002181 0.001399 0.001399 0.995021
 0.995021 0.001399 0.001399 0.002181
 0.002181 0.026213 0.001399 0.970207
 0.002181 0.086097 0.071195 0.840528
 0.044937 0.197195 0.001399 0.756470

MOTIF 4-GTCAACRT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.002024 0.001299 0.994653 0.002024
 0.002024 0.001299 0.047363 0.949314
 0.002024 0.994653 0.001299 0.002024
 0.995379 0.001299 0.001299 0.002024
 0.857036 0.001299 0.093576 0.048089
 0.021094 0.975584 0.001299 0.002024
 0.422717 0.047363 0.435618 0.094302
 0.140664 0.047437 0.001299 0.810600

MOTIF 5-GAAACGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.001702 0.001092 0.979468 0.017737
 0.934887 0.020460 0.026916 0.017737
 0.879845 0.039828 0.039890 0.040438
 0.908145 0.039890 0.011528 0.040438
 0.040438 0.905121 0.039828 0.014614
 0.040438 0.001092 0.840187 0.118284
 0.118284 0.001092 0.840187 0.040438
 0.918518 0.001092 0.078688 0.001702

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd102C.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_fd102C/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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