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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.321 C 0.179 G 0.179 T 0.321 

MOTIF 1-HGATAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 162 P= 2.2e-004
 0.241367 0.444529 0.010691 0.303413
 0.000483 0.000269 0.998766 0.000483
 0.998979 0.000269 0.000269 0.000483
 0.000483 0.000269 0.000269 0.998979
 0.763725 0.000269 0.000269 0.235737
 0.998979 0.000269 0.000269 0.000483
 0.000483 0.212592 0.786443 0.000483
 0.595251 0.119279 0.170692 0.114778

MOTIF 2-ACATACGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.995459 0.001197 0.001197 0.002147
 0.021335 0.928967 0.047550 0.002147
 0.809747 0.094053 0.001197 0.095003
 0.002147 0.140706 0.001197 0.855951
 0.902603 0.094053 0.001197 0.002147
 0.054123 0.896180 0.047550 0.002147
 0.086481 0.001197 0.770667 0.141655
 0.002147 0.001197 0.001197 0.995459

MOTIF 3-ATTGGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.812331 0.002307 0.181226 0.004136
 0.004136 0.091623 0.002307 0.901934
 0.093453 0.002307 0.091623 0.812618
 0.004136 0.002307 0.989421 0.004136
 0.004136 0.002307 0.989421 0.004136
 0.991251 0.002307 0.002307 0.004136
 0.991251 0.002307 0.002307 0.004136
 0.991251 0.002307 0.002307 0.004136

MOTIF 4-AAASAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 7.0e-001
 0.997664 0.000616 0.000616 0.001104
 0.960823 0.000616 0.037457 0.001104
 0.997664 0.000616 0.000616 0.001104
 0.001104 0.607849 0.389943 0.001104
 0.660331 0.314103 0.024462 0.001104
 0.915973 0.024462 0.000616 0.058950
 0.775246 0.000616 0.000616 0.223522
 0.001104 0.045284 0.000616 0.952996

MOTIF 5-AGCACTTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.992586 0.001955 0.001955 0.003505
 0.003505 0.001955 0.991035 0.003505
 0.003505 0.763242 0.001955 0.231298
 0.764793 0.001955 0.001955 0.231298
 0.003505 0.991035 0.001955 0.003505
 0.003505 0.077642 0.001955 0.916899
 0.003505 0.001955 0.001955 0.992586
 0.003505 0.991035 0.001955 0.003505

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/exex.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_exex/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	2.33 seconds
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