********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.318 C 0.182 G 0.182 T 0.318 

MOTIF 1-GAAATARA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.003031 0.001739 0.992200 0.003031
 0.927369 0.001739 0.001739 0.069153
 0.840580 0.067861 0.014386 0.077173
 0.993491 0.001739 0.001739 0.003031
 0.003031 0.001739 0.001739 0.993491
 0.993491 0.001739 0.001739 0.003031
 0.660740 0.001739 0.334491 0.003031
 0.993491 0.001739 0.001739 0.003031

MOTIF 2-ATKYRMAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 81 P= 8.4e-001
 0.982479 0.015409 0.000770 0.001342
 0.194186 0.015409 0.015409 0.774996
 0.025965 0.000770 0.345772 0.627493
 0.015981 0.555080 0.030049 0.398889
 0.398889 0.030049 0.555080 0.015981
 0.627493 0.345772 0.000770 0.025965
 0.774996 0.015409 0.015409 0.194186
 0.001342 0.000770 0.015409 0.982479

MOTIF 3-SGCCAGAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.186473 0.540234 0.270825 0.002468
 0.002468 0.055263 0.939801 0.002468
 0.002468 0.701948 0.293116 0.002468
 0.002468 0.993648 0.001416 0.002468
 0.940852 0.001416 0.001416 0.056315
 0.002468 0.001416 0.993648 0.002468
 0.887005 0.109110 0.001416 0.002468
 0.002468 0.670565 0.324499 0.002468

MOTIF 4-ACCWTGGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.865341 0.125816 0.003224 0.005619
 0.005619 0.985538 0.003224 0.005619
 0.005619 0.985538 0.003224 0.005619
 0.374580 0.003224 0.003224 0.618972
 0.005619 0.003224 0.003224 0.987933
 0.005619 0.125816 0.862946 0.005619
 0.005619 0.003224 0.739960 0.251197
 0.005619 0.003224 0.985538 0.005619

MOTIF 5-AGTGTTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.990330 0.002584 0.002584 0.004502
 0.004502 0.002584 0.988412 0.004502
 0.004502 0.002584 0.100817 0.892097
 0.004502 0.002584 0.988412 0.004502
 0.201285 0.002584 0.100817 0.695315
 0.004502 0.002584 0.002584 0.990330
 0.990330 0.002584 0.002584 0.004502
 0.892097 0.002584 0.100817 0.004502

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/eve.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_eve/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n03.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.86 seconds
********************************************************************************