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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-ACATTGTW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 214 P= 5.7e-009
 0.999120 0.000275 0.000275 0.000329
 0.015580 0.983816 0.000275 0.000329
 0.740708 0.000275 0.000275 0.258741
 0.092752 0.001879 0.000275 0.905094
 0.000329 0.008658 0.001879 0.989135
 0.008725 0.003745 0.981612 0.005917
 0.004520 0.000275 0.000275 0.994929
 0.561240 0.102682 0.006600 0.329478

MOTIF 2-CTTTCACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.238330 0.755642 0.002745 0.003283
 0.086848 0.002745 0.002745 0.907661
 0.003283 0.002745 0.086311 0.907661
 0.003283 0.002745 0.002745 0.991227
 0.003283 0.990689 0.002745 0.003283
 0.823827 0.170145 0.002745 0.003283
 0.003283 0.990689 0.002745 0.003283
 0.003283 0.170145 0.086311 0.740261

MOTIF 3-GGAAGAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 7.0e-001
 0.215604 0.195316 0.535766 0.053313
 0.053482 0.000859 0.944632 0.001027
 0.997255 0.000859 0.000859 0.001027
 0.669750 0.000859 0.302221 0.027170
 0.160646 0.000859 0.837468 0.001027
 0.866287 0.000859 0.000859 0.131995
 0.132122 0.000859 0.813622 0.053397
 0.001027 0.027002 0.970944 0.001027

MOTIF 4-GGTTTTAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.043871 0.001387 0.882085 0.072658
 0.043871 0.001387 0.953084 0.001658
 0.043871 0.128433 0.043599 0.784097
 0.128432 0.001387 0.018861 0.851320
 0.001658 0.001387 0.043599 0.953356
 0.086219 0.085812 0.018861 0.809108
 0.953356 0.043599 0.001387 0.001658
 0.043871 0.043599 0.001387 0.911143

MOTIF 5-GGTGAGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002236 0.001870 0.936747 0.059147
 0.059147 0.058781 0.879836 0.002236
 0.059147 0.115876 0.058781 0.766196
 0.002236 0.001870 0.993659 0.002236
 0.765828 0.001870 0.173155 0.059147
 0.059147 0.058781 0.822924 0.059147
 0.025795 0.058781 0.856276 0.059147
 0.002236 0.001870 0.993659 0.002236

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/dsx.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_dsx/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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