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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.334 C 0.166 G 0.166 T 0.334 

MOTIF 1-ATTAATAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 130 P= 7.7e-002
 0.939473 0.015073 0.015073 0.030382
 0.030382 0.015073 0.015073 0.939473
 0.030382 0.015073 0.015073 0.939473
 0.939473 0.015073 0.015073 0.030382
 0.939473 0.015073 0.015073 0.030382
 0.030382 0.015073 0.015073 0.939473
 0.939473 0.015073 0.015073 0.030382
 0.030382 0.015073 0.015073 0.939473

MOTIF 2-ATATCGAY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 5.0e-001
 0.898312 0.058421 0.035066 0.008202
 0.001651 0.035066 0.035066 0.928217
 0.996710 0.000819 0.000819 0.001651
 0.070255 0.000819 0.035066 0.893859
 0.001651 0.935176 0.035066 0.028107
 0.020104 0.014996 0.825597 0.139303
 0.879461 0.035066 0.069645 0.015828
 0.001651 0.632974 0.000819 0.364556

MOTIF 3-CACTGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003929 0.990193 0.001949 0.003929
 0.992173 0.001949 0.001949 0.003929
 0.003929 0.990193 0.001949 0.003929
 0.003929 0.001949 0.001949 0.992173
 0.003929 0.001949 0.990193 0.003929
 0.992173 0.001949 0.001949 0.003929
 0.746917 0.001949 0.247205 0.003929
 0.992173 0.001949 0.001949 0.003929

MOTIF 4-CCTTAGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.004074 0.989832 0.002021 0.004074
 0.004074 0.989832 0.002021 0.004074
 0.004074 0.002021 0.086510 0.907395
 0.173323 0.002021 0.171271 0.653385
 0.907395 0.002021 0.086510 0.004074
 0.004074 0.002021 0.989832 0.004074
 0.173323 0.002021 0.002021 0.822635
 0.765290 0.002021 0.086510 0.146179

MOTIF 5-CAGGAGCD STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.196855 0.585013 0.098340 0.119791
 0.897998 0.001162 0.001162 0.099677
 0.002343 0.001162 0.994152 0.002343
 0.002343 0.001162 0.994152 0.002343
 0.898155 0.098340 0.001162 0.002343
 0.099677 0.001162 0.896818 0.002343
 0.002343 0.994152 0.001162 0.002343
 0.216813 0.098340 0.342068 0.342779

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/dsf.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_dsf/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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