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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.365 C 0.135 G 0.135 T 0.365 

MOTIF 1-CAAWTGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 3.0e-001
 0.002896 0.993138 0.001071 0.002896
 0.664511 0.056058 0.221549 0.057882
 0.939976 0.001071 0.056058 0.002896
 0.444566 0.001071 0.001071 0.553292
 0.002896 0.001071 0.001071 0.994963
 0.002896 0.001071 0.993138 0.002896
 0.002896 0.993138 0.001071 0.002896
 0.664512 0.221371 0.001071 0.113046

MOTIF 2-AAACATTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 3.7e-001
 0.997018 0.000634 0.000634 0.001714
 0.828981 0.000634 0.079608 0.090777
 0.734296 0.263356 0.000634 0.001714
 0.001714 0.995937 0.000634 0.001714
 0.950985 0.000634 0.046667 0.001714
 0.001714 0.000634 0.000634 0.997018
 0.001714 0.210552 0.000634 0.787100
 0.147129 0.000634 0.000634 0.851603

MOTIF 3-ATTCCCWA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.841806 0.000762 0.095183 0.062250
 0.197758 0.000762 0.000762 0.800718
 0.316243 0.000762 0.000762 0.682234
 0.002060 0.995119 0.000762 0.002060
 0.002060 0.995119 0.000762 0.002060
 0.002060 0.995119 0.000762 0.002060
 0.371928 0.000762 0.196460 0.430850
 0.729094 0.000762 0.000762 0.269383

MOTIF 4-AATTTCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 8.8e-001
 0.942273 0.012273 0.012273 0.033182
 0.942273 0.012273 0.012273 0.033182
 0.033182 0.012273 0.012273 0.942273
 0.033182 0.012273 0.012273 0.942273
 0.033182 0.012273 0.012273 0.942273
 0.033182 0.921364 0.012273 0.033182
 0.033182 0.012273 0.012273 0.942273
 0.033182 0.921364 0.012273 0.033182

MOTIF 5-AAATAACT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.942273 0.012273 0.012273 0.033182
 0.942273 0.012273 0.012273 0.033182
 0.942273 0.012273 0.012273 0.033182
 0.033182 0.012273 0.012273 0.942273
 0.942273 0.012273 0.012273 0.033182
 0.942273 0.012273 0.012273 0.033182
 0.033182 0.921364 0.012273 0.033182
 0.033182 0.012273 0.012273 0.942273

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/dmrt99B.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_dmrt99B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.45 seconds
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