********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.34 C 0.16 G 0.16 T 0.34 

MOTIF 1-CATATCCW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.003145 0.863945 0.129764 0.003145
 0.903198 0.065623 0.028034 0.003145
 0.131634 0.001482 0.001482 0.865403
 0.929750 0.001482 0.001482 0.067287
 0.003145 0.001482 0.065623 0.929750
 0.003145 0.992228 0.001482 0.003145
 0.003145 0.992228 0.001482 0.003145
 0.543241 0.065623 0.065623 0.325514

MOTIF 2-ACTGWGAD STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 8.3e-001
 0.996234 0.000913 0.000913 0.001939
 0.001939 0.995208 0.000913 0.001939
 0.068458 0.000913 0.278136 0.652493
 0.001939 0.000913 0.995208 0.001939
 0.560435 0.000913 0.000913 0.437738
 0.001939 0.000913 0.995208 0.001939
 0.663218 0.040462 0.000913 0.295406
 0.374886 0.000913 0.345167 0.279034

MOTIF 3-AGTGTGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.8e-001
 0.940562 0.055523 0.001253 0.002661
 0.002661 0.001253 0.993424 0.002661
 0.274184 0.001253 0.001253 0.723310
 0.111375 0.001253 0.830441 0.056931
 0.002661 0.001253 0.015874 0.980211
 0.056931 0.055523 0.830615 0.056931
 0.777579 0.164237 0.001253 0.056931
 0.002661 0.164237 0.776171 0.056931

MOTIF 4-ATTCCCTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 8.8e-001
 0.987880 0.009068 0.000977 0.002074
 0.044377 0.000977 0.000977 0.953669
 0.044377 0.000977 0.000977 0.953669
 0.093185 0.733732 0.000977 0.172106
 0.044377 0.867830 0.000977 0.086816
 0.044377 0.740237 0.171009 0.044377
 0.073225 0.000977 0.000977 0.924820
 0.002074 0.043280 0.043280 0.911366

MOTIF 5-CTCGACCH STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.045646 0.759012 0.193208 0.002134
 0.089159 0.001005 0.175195 0.734641
 0.237709 0.523436 0.001005 0.237849
 0.002134 0.001005 0.994727 0.002134
 0.952344 0.001005 0.001005 0.045646
 0.002134 0.951215 0.001005 0.045646
 0.002134 0.864050 0.001005 0.132811
 0.219837 0.218568 0.131683 0.429913

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/dmrt93B.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_dmrt93B/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.52 seconds
********************************************************************************