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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.226 G 0.226 T 0.275 

MOTIF 1-RCACGTGY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 116 P= 2.3e-003
 0.455998 0.133600 0.387481 0.022921
 0.000423 0.998806 0.000348 0.000423
 0.998881 0.000348 0.000348 0.000423
 0.000423 0.855859 0.000348 0.143370
 0.143370 0.000348 0.855859 0.000423
 0.000423 0.000348 0.000348 0.998881
 0.000423 0.000348 0.998806 0.000423
 0.022921 0.387481 0.133600 0.455998

MOTIF 2-YGGTCACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 2.4e-001
 0.045724 0.373071 0.013280 0.567926
 0.001742 0.001431 0.995086 0.001742
 0.001742 0.001431 0.995086 0.001742
 0.001742 0.001431 0.001431 0.995397
 0.051058 0.945769 0.001431 0.001742
 0.907433 0.045413 0.045413 0.001742
 0.045724 0.951104 0.001431 0.001742
 0.863310 0.045413 0.001431 0.089847

MOTIF 3-AACAGCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 3.0e-001
 0.996452 0.001103 0.001103 0.001342
 0.689720 0.001103 0.239377 0.069800
 0.001342 0.894409 0.102906 0.001342
 0.962554 0.035001 0.001103 0.001342
 0.001342 0.001103 0.860402 0.137153
 0.001342 0.996212 0.001103 0.001342
 0.001342 0.001103 0.001103 0.996452
 0.035241 0.001103 0.962314 0.001342

MOTIF 4-AGTTAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.970824 0.019272 0.001097 0.008807
 0.230092 0.057831 0.710741 0.001336
 0.001336 0.001097 0.068667 0.928899
 0.102854 0.001097 0.170844 0.725205
 0.854345 0.034828 0.001097 0.109730
 0.962739 0.001097 0.001097 0.035067
 0.860892 0.001097 0.001097 0.136913
 0.001336 0.001097 0.001097 0.996469

MOTIF 5-ATCGATAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.0e-001
 0.971321 0.000840 0.000840 0.027000
 0.026916 0.070254 0.052627 0.850203
 0.026832 0.971306 0.000840 0.001022
 0.026874 0.026650 0.934769 0.011707
 0.997299 0.000840 0.000840 0.001022
 0.001022 0.026691 0.000840 0.971447
 0.997299 0.000840 0.000840 0.001022
 0.160816 0.014747 0.647559 0.176879

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/dm.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_dm/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	2.08 seconds
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