********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-RCAGCTGY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 155 P= 6.0e-004
 0.361319 0.193766 0.444450 0.000465
 0.000465 0.955336 0.000461 0.043737
 0.998613 0.000461 0.000461 0.000465
 0.000465 0.144175 0.764014 0.091346
 0.091346 0.764014 0.144175 0.000465
 0.000465 0.000461 0.000461 0.998613
 0.043737 0.000461 0.955336 0.000465
 0.000465 0.444450 0.193766 0.361319

MOTIF 2-ACGCACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.994975 0.001670 0.001670 0.001686
 0.001686 0.994959 0.001670 0.001686
 0.001686 0.001670 0.788940 0.207704
 0.001686 0.855263 0.001670 0.141382
 0.715434 0.281211 0.001670 0.001686
 0.001686 0.925186 0.048185 0.024943
 0.824269 0.048185 0.032680 0.094866
 0.001686 0.948443 0.001670 0.048201

MOTIF 3-GAGCGAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 118 P= 5.0e-001
 0.016985 0.003723 0.866730 0.112562
 0.921409 0.000588 0.059029 0.018973
 0.081217 0.072937 0.782404 0.063443
 0.031990 0.675832 0.181933 0.110245
 0.040161 0.000588 0.909484 0.049766
 0.701659 0.040155 0.158616 0.099570
 0.058280 0.042612 0.854254 0.044854
 0.877115 0.021878 0.073069 0.027938

MOTIF 4-ATRCGYAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.993077 0.002300 0.002300 0.002323
 0.002323 0.002300 0.002300 0.993077
 0.420243 0.079757 0.305207 0.194793
 0.002323 0.800584 0.194771 0.002323
 0.002323 0.194771 0.800584 0.002323
 0.194793 0.305207 0.079757 0.420243
 0.993077 0.002300 0.002300 0.002323
 0.002323 0.002300 0.002300 0.993077

MOTIF 5-AADGTAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.937471 0.002026 0.002026 0.058478
 0.993904 0.002026 0.002026 0.002045
 0.286035 0.002026 0.312950 0.398990
 0.002045 0.002026 0.993884 0.002045
 0.002045 0.002026 0.002026 0.993904
 0.993904 0.002026 0.002026 0.002045
 0.909255 0.002026 0.086674 0.002045
 0.880948 0.058458 0.058549 0.002045

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/da.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_da/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n03.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.88 seconds
********************************************************************************