********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.334 C 0.166 G 0.166 T 0.334 

MOTIF 1-ACAGTGSA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 1.7e-001
 0.514775 0.121657 0.164342 0.199225
 0.000884 0.961106 0.000439 0.037570
 0.768127 0.000439 0.147301 0.084134
 0.000884 0.000439 0.979449 0.019227
 0.084199 0.000439 0.026375 0.888987
 0.000884 0.000439 0.997792 0.000884
 0.026821 0.307441 0.504006 0.161732
 0.746437 0.093913 0.089116 0.070534

MOTIF 2-GTATCTAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.093141 0.036414 0.865465 0.004980
 0.037278 0.015573 0.072092 0.875058
 0.853987 0.036414 0.000851 0.108748
 0.001715 0.000851 0.015573 0.981862
 0.085073 0.734088 0.072092 0.108748
 0.001715 0.072092 0.000851 0.925343
 0.993318 0.000851 0.000851 0.004980
 0.108748 0.000851 0.036414 0.853987

MOTIF 3-GCACTTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.002461 0.001221 0.993858 0.002461
 0.002461 0.972732 0.022347 0.002461
 0.739598 0.103453 0.103453 0.053495
 0.002461 0.993858 0.001221 0.002461
 0.095311 0.001221 0.001221 0.902248
 0.061596 0.001221 0.001221 0.935963
 0.892865 0.001221 0.103453 0.002461
 0.841995 0.052255 0.052255 0.053495

MOTIF 4-AAAATGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 7.7e-001
 0.770759 0.015382 0.002596 0.211263
 0.928901 0.000585 0.000585 0.069929
 0.864284 0.082756 0.007846 0.045113
 0.978598 0.001679 0.005260 0.014463
 0.013778 0.007846 0.045055 0.933321
 0.052641 0.053229 0.892952 0.001179
 0.086392 0.078409 0.005260 0.829939
 0.913033 0.025067 0.016880 0.045021

MOTIF 5-GTAGASCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002981 0.001479 0.992560 0.002981
 0.250252 0.001479 0.001479 0.746791
 0.622956 0.001479 0.125114 0.250451
 0.002981 0.001479 0.992560 0.002981
 0.932244 0.001479 0.063297 0.002981
 0.002981 0.435001 0.559038 0.002981
 0.002981 0.992560 0.001479 0.002981
 0.002981 0.001479 0.001479 0.994062

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/cyc.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_cyc/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n08.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.55 seconds
********************************************************************************