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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-CACGTGAY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 179 P= 5.7e-009
 0.025264 0.974251 0.000223 0.000262
 0.985014 0.006954 0.003997 0.004036
 0.000262 0.999252 0.000223 0.000262
 0.000262 0.000223 0.992511 0.007004
 0.040974 0.075774 0.013706 0.869546
 0.000262 0.000223 0.999252 0.000262
 0.773497 0.199319 0.000223 0.026962
 0.067514 0.505754 0.150330 0.276403

MOTIF 2-TCTTATCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 6.7e-001
 0.000865 0.281233 0.090270 0.627632
 0.000865 0.908000 0.090270 0.000865
 0.000865 0.045195 0.000736 0.953204
 0.114107 0.022930 0.067533 0.795430
 0.997663 0.000736 0.000736 0.000865
 0.000865 0.022930 0.000736 0.975469
 0.000865 0.997534 0.000736 0.000865
 0.658952 0.000736 0.232772 0.107540

MOTIF 3-TGCCAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.002384 0.002028 0.002028 0.993561
 0.186454 0.002028 0.809134 0.002384
 0.002384 0.993204 0.002028 0.002384
 0.002384 0.993204 0.002028 0.002384
 0.932401 0.002028 0.002028 0.063544
 0.721516 0.002028 0.248754 0.027702
 0.871242 0.002028 0.063187 0.063544
 0.993561 0.002028 0.002028 0.002384

MOTIF 4-ATCGCTCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.834821 0.041586 0.041521 0.082073
 0.041755 0.001332 0.081839 0.875074
 0.001567 0.915157 0.041521 0.041755
 0.001567 0.001332 0.995534 0.001567
 0.001567 0.915028 0.001332 0.082073
 0.041755 0.041521 0.001332 0.915392
 0.001567 0.847433 0.081839 0.069161
 0.203811 0.001332 0.001332 0.793525

MOTIF 5-AGCGGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.992023 0.002512 0.002512 0.002953
 0.002953 0.002512 0.991582 0.002953
 0.078714 0.764055 0.154278 0.002953
 0.002953 0.002512 0.991582 0.002953
 0.002953 0.002512 0.991582 0.002953
 0.916262 0.002512 0.002512 0.078714
 0.840257 0.002512 0.154278 0.002953
 0.916262 0.002512 0.002512 0.078714

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/cwo.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_cwo/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.78 seconds
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