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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.207 G 0.207 T 0.292 

MOTIF 1-WCAGCTGW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 196 P= 5.7e-009
 0.533180 0.013734 0.000217 0.452869
 0.000306 0.999170 0.000217 0.000306
 0.999259 0.000217 0.000217 0.000306
 0.000306 0.000217 0.992566 0.006911
 0.006911 0.992566 0.000217 0.000306
 0.000306 0.000217 0.000217 0.999259
 0.000306 0.000217 0.999170 0.000306
 0.452869 0.000217 0.013734 0.533180

MOTIF 2-GYTATCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 1.1e-002
 0.000942 0.135898 0.784403 0.078757
 0.000942 0.486407 0.000668 0.511983
 0.000942 0.000668 0.000668 0.997722
 0.997722 0.000668 0.000668 0.000942
 0.000942 0.000668 0.000668 0.997722
 0.000942 0.997448 0.000668 0.000942
 0.000942 0.000668 0.997448 0.000942
 0.997722 0.000668 0.000668 0.000942

MOTIF 3-AGCCCTGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 1.2e-001
 0.941972 0.000826 0.056037 0.001165
 0.028770 0.028432 0.709007 0.233791
 0.028770 0.902511 0.000826 0.067892
 0.194937 0.775466 0.000826 0.028770
 0.001165 0.996844 0.000826 0.001165
 0.001165 0.000826 0.056037 0.941972
 0.111675 0.012254 0.764396 0.111675
 0.001165 0.000826 0.969238 0.028770

MOTIF 4-AGTTGGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 7.0e-001
 0.964879 0.000813 0.006007 0.028301
 0.001146 0.055299 0.942409 0.001146
 0.001146 0.000813 0.165068 0.832973
 0.001146 0.000813 0.055211 0.942830
 0.001146 0.000813 0.982264 0.015778
 0.001146 0.083075 0.884184 0.031595
 0.055544 0.915341 0.000813 0.028301
 0.819146 0.082542 0.055211 0.043101

MOTIF 5-AAATAAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 7.6e-001
 0.906984 0.001869 0.065071 0.026076
 0.781086 0.126660 0.076052 0.016202
 0.930645 0.050870 0.017429 0.001056
 0.001056 0.001869 0.000749 0.996326
 0.930042 0.028804 0.011107 0.030048
 0.939811 0.000749 0.050951 0.008489
 0.903884 0.050870 0.005535 0.039712
 0.199683 0.681970 0.005535 0.112812

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/crp.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_crp/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.23 seconds
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