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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.32 C 0.18 G 0.18 T 0.32 

MOTIF 1-TATTTGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 1.2e-001
 0.001568 0.000886 0.083411 0.914135
 0.894272 0.000886 0.103274 0.001568
 0.097256 0.014969 0.000886 0.886889
 0.123045 0.186169 0.000886 0.689900
 0.069717 0.000886 0.000886 0.928511
 0.001568 0.000886 0.995978 0.001568
 0.996660 0.000886 0.000886 0.001568
 0.197134 0.083008 0.062780 0.657078

MOTIF 2-CCCTTSCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.002078 0.994670 0.001174 0.002078
 0.002078 0.994670 0.001174 0.002078
 0.002078 0.994670 0.001174 0.002078
 0.227654 0.001174 0.001174 0.769998
 0.002078 0.091346 0.272565 0.634010
 0.002078 0.317067 0.633690 0.047164
 0.002078 0.994670 0.001174 0.002078
 0.047164 0.226750 0.091346 0.634739

MOTIF 3-AACAAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 9.9e-001
 0.993862 0.001628 0.001628 0.002882
 0.993862 0.001628 0.001628 0.002882
 0.002882 0.992609 0.001628 0.002882
 0.923762 0.001628 0.001628 0.072982
 0.847325 0.001628 0.001628 0.149419
 0.805705 0.001628 0.189785 0.002882
 0.993862 0.001628 0.001628 0.002882
 0.002882 0.001628 0.001628 0.993862

MOTIF 4-CTCAAGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.073850 0.921058 0.001838 0.003254
 0.003254 0.072434 0.072434 0.851878
 0.003254 0.991654 0.001838 0.003254
 0.993069 0.001838 0.001838 0.003254
 0.993069 0.001838 0.001838 0.003254
 0.003254 0.001838 0.779184 0.215723
 0.003254 0.001838 0.850235 0.144672
 0.710346 0.072547 0.072434 0.144672

MOTIF 5-GGCCTGAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 1.0e+000
 0.109320 0.049624 0.790940 0.050116
 0.133814 0.025131 0.697181 0.143874
 0.084748 0.840005 0.000638 0.074609
 0.050116 0.766249 0.059764 0.123872
 0.123714 0.147834 0.108829 0.619623
 0.074609 0.025131 0.815433 0.084827
 0.850557 0.000638 0.098690 0.050116
 0.099260 0.751935 0.049624 0.099181

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/crc.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_crc/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n06.farnam.hpc.yale.internal
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FINALTIME:	1.83 seconds
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