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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.311 C 0.189 G 0.189 T 0.311 

MOTIF 1-ACAACAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.937355 0.017191 0.017191 0.028264
 0.028264 0.926282 0.017191 0.028264
 0.937355 0.017191 0.017191 0.028264
 0.937355 0.017191 0.017191 0.028264
 0.028264 0.926282 0.017191 0.028264
 0.937355 0.017191 0.017191 0.028264
 0.937355 0.017191 0.017191 0.028264
 0.028264 0.926282 0.017191 0.028264

MOTIF 2-GATAAGMT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 3.3e-001
 0.001203 0.000732 0.996861 0.001203
 0.959397 0.000732 0.000732 0.039139
 0.001203 0.000732 0.000732 0.997333
 0.809398 0.027561 0.081306 0.081734
 0.878591 0.000732 0.000732 0.119945
 0.001203 0.011838 0.947819 0.039139
 0.348971 0.443356 0.175382 0.032292
 0.187307 0.011838 0.183950 0.616905

MOTIF 3-TCTTCATT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.028264 0.017191 0.017191 0.937355
 0.028264 0.926282 0.017191 0.028264
 0.028264 0.017191 0.017191 0.937355
 0.028264 0.017191 0.017191 0.937355
 0.028264 0.926282 0.017191 0.028264
 0.937355 0.017191 0.017191 0.028264
 0.028264 0.017191 0.017191 0.937355
 0.028264 0.017191 0.017191 0.937355

MOTIF 4-AAAATAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 140 P= 6.2e-001
 0.905528 0.025131 0.045720 0.023621
 0.925563 0.029685 0.006377 0.038374
 0.954036 0.024390 0.017075 0.004499
 0.758340 0.134519 0.055288 0.051853
 0.001491 0.018729 0.005062 0.974718
 0.939562 0.003927 0.038251 0.018260
 0.882462 0.034445 0.010782 0.072311
 0.818842 0.051072 0.001036 0.129049

MOTIF 5-GCACACAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003551 0.002160 0.990737 0.003551
 0.003551 0.720171 0.160771 0.115506
 0.992128 0.002160 0.002160 0.003551
 0.003551 0.990737 0.002160 0.003551
 0.912950 0.081338 0.002160 0.003551
 0.003551 0.990737 0.002160 0.003551
 0.880173 0.114115 0.002160 0.003551
 0.992128 0.002160 0.002160 0.003551

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/corto.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_corto/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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