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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.287 C 0.213 G 0.213 T 0.287 

MOTIF 1-AGTCATGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 80 P= 9.8e-002
 0.929247 0.023504 0.023504 0.023746
 0.056258 0.069329 0.873469 0.000943
 0.000943 0.039054 0.000701 0.959301
 0.010383 0.919492 0.046380 0.023746
 0.997654 0.000701 0.000701 0.000943
 0.000943 0.023540 0.023504 0.952012
 0.046622 0.138851 0.679114 0.135413
 0.092932 0.151980 0.728577 0.026512

MOTIF 2-ACAATCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.926060 0.036243 0.001081 0.036616
 0.001455 0.960848 0.036243 0.001455
 0.876230 0.036243 0.086072 0.001455
 0.855511 0.071631 0.036243 0.036616
 0.192269 0.001081 0.036243 0.770407
 0.071890 0.769843 0.156812 0.001455
 0.001455 0.086376 0.875553 0.036616
 0.926003 0.036299 0.001081 0.036616

MOTIF 3-AGCWACGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.907039 0.089772 0.001360 0.001829
 0.179082 0.001360 0.817729 0.001829
 0.046035 0.932476 0.019660 0.001829
 0.464051 0.045637 0.134406 0.355906
 0.995451 0.001360 0.001360 0.001829
 0.001829 0.994982 0.001360 0.001829
 0.001829 0.001360 0.994982 0.001829
 0.818342 0.089914 0.089914 0.001829

MOTIF 4-GAGGGTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.164176 0.001655 0.831942 0.002226
 0.994463 0.001655 0.001655 0.002226
 0.056036 0.055465 0.778480 0.110019
 0.002226 0.001655 0.993892 0.002226
 0.002226 0.001655 0.993892 0.002226
 0.110019 0.001655 0.001655 0.886671
 0.810586 0.185533 0.001655 0.002226
 0.617449 0.109275 0.055465 0.217812

MOTIF 5-CCGAGTCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.026073 0.928473 0.019382 0.026073
 0.026073 0.928473 0.019382 0.026073
 0.026073 0.019382 0.928473 0.026073
 0.935164 0.019382 0.019382 0.026073
 0.026073 0.019382 0.928473 0.026073
 0.026073 0.019382 0.019382 0.935164
 0.026073 0.928473 0.019382 0.026073
 0.026073 0.019382 0.019382 0.935164

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/cnc.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_cnc/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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