********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.326 C 0.174 G 0.174 T 0.326 

MOTIF 1-AAGTCAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.993075 0.000919 0.000919 0.005087
 0.959809 0.000919 0.000919 0.038353
 0.001723 0.000919 0.995634 0.001723
 0.075101 0.037549 0.037549 0.849800
 0.001723 0.785062 0.000919 0.212296
 0.944645 0.016083 0.037549 0.001723
 0.738724 0.000919 0.074297 0.186060
 0.112325 0.016083 0.089777 0.781815

MOTIF 2-GTACACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.0e-001
 0.042243 0.141691 0.738964 0.077102
 0.036682 0.059803 0.029884 0.873631
 0.785260 0.035912 0.177180 0.001648
 0.036682 0.960791 0.000879 0.001648
 0.961561 0.000879 0.000879 0.036682
 0.036682 0.960791 0.000879 0.001648
 0.001648 0.050415 0.071058 0.876879
 0.001648 0.071058 0.908129 0.019165

MOTIF 3-ATTKMAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 8.4e-001
 0.926197 0.027106 0.044522 0.002174
 0.044708 0.028696 0.042266 0.884330
 0.039482 0.024651 0.020376 0.915492
 0.047249 0.036410 0.374929 0.541412
 0.541412 0.374929 0.036410 0.047249
 0.915492 0.020376 0.024651 0.039482
 0.884330 0.042266 0.028696 0.044708
 0.002174 0.044522 0.027106 0.926197

MOTIF 4-CACAGTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003861 0.908017 0.002059 0.086063
 0.992021 0.002059 0.002059 0.003861
 0.003861 0.825814 0.002059 0.168265
 0.909951 0.002059 0.002059 0.085931
 0.168265 0.002059 0.825814 0.003861
 0.003861 0.084129 0.002059 0.909951
 0.003861 0.002059 0.990219 0.003861
 0.003861 0.002059 0.990219 0.003861

MOTIF 5-AGCTTAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.938736 0.015809 0.015809 0.029645
 0.029645 0.015809 0.924900 0.029645
 0.029645 0.924900 0.015809 0.029645
 0.029645 0.015809 0.015809 0.938736
 0.029645 0.015809 0.015809 0.938736
 0.938736 0.015809 0.015809 0.029645
 0.029645 0.015809 0.924900 0.029645
 0.938736 0.015809 0.015809 0.029645

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/chif.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_chif/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n12.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.63 seconds
********************************************************************************