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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.271 C 0.229 G 0.229 T 0.271 

MOTIF 1-ACGCACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 140 P= 1.7e-004
 0.998116 0.000591 0.000591 0.000702
 0.000702 0.998005 0.000591 0.000702
 0.000702 0.106672 0.620432 0.272195
 0.000702 0.998005 0.000591 0.000702
 0.952316 0.000591 0.000591 0.046501
 0.000702 0.800154 0.000591 0.198553
 0.998116 0.000591 0.000591 0.000702
 0.000702 0.830432 0.000591 0.168274

MOTIF 2-AAARGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 3.0e-001
 0.996565 0.001078 0.001078 0.001280
 0.734426 0.001078 0.263217 0.001280
 0.671694 0.001078 0.001078 0.326150
 0.530573 0.001078 0.270432 0.197917
 0.001280 0.001078 0.996363 0.001280
 0.829634 0.001078 0.001078 0.168210
 0.996565 0.001078 0.001078 0.001280
 0.996565 0.001078 0.001078 0.001280

MOTIF 3-ACCAACAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.995530 0.001403 0.001403 0.001665
 0.001665 0.995267 0.001403 0.001665
 0.001665 0.995267 0.001403 0.001665
 0.995530 0.001403 0.001403 0.001665
 0.739676 0.001403 0.129537 0.129385
 0.044193 0.696121 0.001403 0.258283
 0.782754 0.043930 0.086595 0.086721
 0.073195 0.923738 0.001403 0.001665

MOTIF 4-ATACATAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.994113 0.001847 0.001847 0.002193
 0.002193 0.001847 0.001847 0.994113
 0.787388 0.057944 0.152474 0.002193
 0.002193 0.937760 0.057854 0.002193
 0.769542 0.001847 0.170410 0.058200
 0.002193 0.001847 0.001847 0.994113
 0.994113 0.001847 0.001847 0.002193
 0.002193 0.993767 0.001847 0.002193

MOTIF 5-CCAGCAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.0e+000
 0.085610 0.912365 0.000926 0.001099
 0.254722 0.647299 0.000926 0.097053
 0.940889 0.000926 0.057085 0.001099
 0.113418 0.029006 0.772238 0.085338
 0.001099 0.828217 0.000926 0.169758
 0.603663 0.197755 0.057085 0.141497
 0.001099 0.000926 0.856206 0.141769
 0.940889 0.000926 0.057085 0.001099

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/cg.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_cg/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	1.51 seconds
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