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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.298 C 0.202 G 0.202 T 0.298 

MOTIF 1-RGCAAATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 95 P= 1.8e-003
 0.540054 0.000515 0.288195 0.171236
 0.000759 0.000515 0.997967 0.000759
 0.000759 0.850651 0.035881 0.112709
 0.962789 0.035938 0.000515 0.000759
 0.998212 0.000515 0.000515 0.000759
 0.945162 0.000515 0.018198 0.036125
 0.000759 0.238037 0.000515 0.760689
 0.874315 0.000515 0.088988 0.036182

MOTIF 2-CGATAAGR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 1.7e-001
 0.001240 0.822921 0.000841 0.174998
 0.049766 0.000841 0.948153 0.001240
 0.910433 0.000841 0.000841 0.087885
 0.059035 0.029692 0.164862 0.746412
 0.997078 0.000841 0.000841 0.001240
 0.792170 0.078217 0.070578 0.059035
 0.001240 0.000841 0.996679 0.001240
 0.361073 0.049366 0.450538 0.139023

MOTIF 3-ATATTTAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 2.4e-001
 0.929135 0.000940 0.014291 0.055634
 0.033639 0.007109 0.065549 0.893703
 0.860719 0.000940 0.007109 0.131232
 0.001387 0.033192 0.033192 0.932228
 0.079626 0.033192 0.033192 0.853990
 0.014738 0.014291 0.000940 0.970031
 0.996734 0.000940 0.000940 0.001387
 0.098481 0.163511 0.736621 0.001387

MOTIF 4-TAAACAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 7.7e-001
 0.001517 0.001028 0.001028 0.996427
 0.996427 0.001028 0.001028 0.001517
 0.852985 0.001028 0.060358 0.085629
 0.801732 0.018665 0.142811 0.036791
 0.001517 0.958425 0.004267 0.035791
 0.828734 0.114383 0.036360 0.020523
 0.975867 0.001028 0.015783 0.007322
 0.808630 0.095897 0.046612 0.048861

MOTIF 5-CTGTTTAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.003026 0.991896 0.002051 0.003026
 0.144040 0.002051 0.002051 0.851857
 0.003026 0.072445 0.921502 0.003026
 0.073420 0.002051 0.072445 0.852084
 0.003026 0.002051 0.002051 0.992871
 0.003026 0.002051 0.213913 0.781009
 0.992871 0.002051 0.002051 0.003026
 0.003026 0.991896 0.002051 0.003026

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/caup.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_caup/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.76 seconds
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