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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.267 C 0.234 G 0.234 T 0.267 

MOTIF 1-GYCATAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 179 P= 5.3e-006
 0.121131 0.106878 0.770050 0.001941
 0.002030 0.344997 0.000980 0.651992
 0.094970 0.895969 0.000285 0.008776
 0.909623 0.000285 0.089767 0.000325
 0.000325 0.000285 0.000285 0.999106
 0.994552 0.000285 0.000285 0.004878
 0.982203 0.008736 0.000285 0.008776
 0.998330 0.000285 0.000285 0.001101

MOTIF 2-DACTACCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 2.4e-001
 0.365418 0.124073 0.277649 0.232859
 0.844724 0.001034 0.078939 0.075303
 0.031915 0.658422 0.001034 0.308630
 0.001180 0.001034 0.001034 0.996753
 0.750674 0.247113 0.001034 0.001180
 0.001180 0.953218 0.044422 0.001180
 0.001180 0.996607 0.001034 0.001180
 0.001180 0.001034 0.001034 0.996753

MOTIF 3-GAAGACGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 3.0e-001
 0.001946 0.001705 0.994402 0.001946
 0.944025 0.001705 0.001705 0.052565
 0.813894 0.131836 0.052324 0.001946
 0.001946 0.052324 0.943784 0.001946
 0.791842 0.001705 0.103106 0.103347
 0.052646 0.893083 0.052324 0.001946
 0.001946 0.001705 0.994402 0.001946
 0.842787 0.052324 0.052324 0.052565

MOTIF 4-CAGTTTCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.0e-001
 0.001689 0.907271 0.045415 0.045624
 0.927743 0.025153 0.045415 0.001689
 0.001689 0.001480 0.995142 0.001689
 0.001689 0.045415 0.089492 0.863404
 0.001689 0.001480 0.001480 0.995351
 0.001689 0.001480 0.045415 0.951416
 0.045624 0.774614 0.178072 0.001689
 0.045695 0.045415 0.730608 0.178282

MOTIF 5-AGAGAATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 8.8e-001
 0.933318 0.021227 0.021227 0.024227
 0.024227 0.021227 0.930318 0.024227
 0.933318 0.021227 0.021227 0.024227
 0.024227 0.021227 0.930318 0.024227
 0.933318 0.021227 0.021227 0.024227
 0.933318 0.021227 0.021227 0.024227
 0.024227 0.021227 0.021227 0.933318
 0.024227 0.021227 0.930318 0.024227

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/cad.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_cad/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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