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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.305 C 0.195 G 0.195 T 0.305 

MOTIF 1-CTCTCTGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.2e-001
 0.024010 0.946935 0.000645 0.028409
 0.070041 0.062354 0.000645 0.866960
 0.113156 0.813861 0.069858 0.003125
 0.059398 0.079156 0.115777 0.745669
 0.093001 0.875512 0.007477 0.024010
 0.105392 0.075905 0.023642 0.795061
 0.139142 0.023642 0.670530 0.166686
 0.024010 0.826756 0.046639 0.102595

MOTIF 2-CAAATGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.2e-001
 0.002124 0.994398 0.001353 0.002124
 0.946968 0.001353 0.049555 0.002124
 0.623320 0.082427 0.243926 0.050327
 0.946968 0.049555 0.001353 0.002124
 0.002124 0.001353 0.001353 0.995170
 0.002124 0.001353 0.897838 0.098685
 0.098685 0.897838 0.001353 0.002124
 0.898765 0.001353 0.049555 0.050327

MOTIF 3-CAAAGTSC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.0e-001
 0.001611 0.995752 0.001026 0.001611
 0.775043 0.118504 0.016159 0.090294
 0.996337 0.001026 0.001026 0.001611
 0.996337 0.001026 0.001026 0.001611
 0.001611 0.001026 0.995752 0.001611
 0.001611 0.001026 0.001026 0.996337
 0.090294 0.291732 0.432476 0.185498
 0.001611 0.995752 0.001026 0.001611

MOTIF 4-AAAAACGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.850828 0.001349 0.097637 0.050186
 0.769982 0.082195 0.049416 0.098407
 0.850518 0.146015 0.001349 0.002119
 0.802607 0.097637 0.001349 0.098407
 0.995184 0.001349 0.001349 0.002119
 0.002119 0.994414 0.001349 0.002119
 0.002119 0.001349 0.994414 0.002119
 0.995184 0.001349 0.001349 0.002119

MOTIF 5-CACACACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 6.7e-001
 0.001555 0.960610 0.036280 0.001555
 0.908070 0.036336 0.036393 0.019200
 0.001555 0.782903 0.071683 0.143859
 0.916321 0.036280 0.036336 0.011063
 0.001555 0.936544 0.060345 0.001555
 0.890482 0.036280 0.036393 0.036845
 0.001555 0.904331 0.024517 0.069597
 0.960820 0.000990 0.015232 0.022957

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/bsh.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_bsh/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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