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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.329 C 0.171 G 0.171 T 0.329 

MOTIF 1-CAGACAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 5.0e-001
 0.007862 0.956828 0.033746 0.001563
 0.957579 0.007112 0.000812 0.034497
 0.075357 0.044511 0.773861 0.106270
 0.811138 0.020750 0.166549 0.001563
 0.100710 0.784089 0.033746 0.081455
 0.963878 0.000812 0.000812 0.034497
 0.765744 0.066786 0.066786 0.100684
 0.963878 0.000812 0.000812 0.034497

MOTIF 2-CCATAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 5.0e-001
 0.001694 0.889437 0.000880 0.107990
 0.001694 0.995733 0.000880 0.001694
 0.818033 0.143713 0.036560 0.001694
 0.001694 0.036560 0.108264 0.853483
 0.960866 0.036560 0.000880 0.001694
 0.788799 0.108034 0.036560 0.066608
 0.960866 0.036560 0.000880 0.001694
 0.289568 0.036560 0.000880 0.672992

MOTIF 3-GTTTACTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.002611 0.056358 0.938421 0.002611
 0.167792 0.056358 0.056358 0.719492
 0.002611 0.001357 0.001357 0.994676
 0.002611 0.056358 0.056358 0.884673
 0.994676 0.001357 0.001357 0.002611
 0.002611 0.717438 0.277340 0.002611
 0.002611 0.001357 0.056358 0.939674
 0.829140 0.001357 0.001357 0.168147

MOTIF 4-TAAACAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 9.7e-001
 0.076962 0.012152 0.021282 0.889605
 0.920564 0.000932 0.000932 0.077573
 0.911995 0.069646 0.000932 0.017427
 0.895051 0.038700 0.064456 0.001793
 0.001793 0.912601 0.076590 0.009017
 0.920807 0.038700 0.038700 0.001793
 0.942941 0.038700 0.000932 0.017427
 0.073363 0.076590 0.618682 0.231364

MOTIF 5-ACCTATCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.939000 0.015545 0.015545 0.029909
 0.029909 0.924636 0.015545 0.029909
 0.029909 0.924636 0.015545 0.029909
 0.029909 0.015545 0.015545 0.939000
 0.939000 0.015545 0.015545 0.029909
 0.029909 0.015545 0.015545 0.939000
 0.029909 0.924636 0.015545 0.029909
 0.029909 0.015545 0.924636 0.029909

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/brk.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_brk/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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