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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.309 C 0.191 G 0.191 T 0.309 

MOTIF 1-CTTGGCTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 3.0e-001
 0.037614 0.920475 0.036998 0.004913
 0.109744 0.036998 0.036998 0.816261
 0.181700 0.000991 0.036998 0.780312
 0.109976 0.000991 0.872521 0.016512
 0.109744 0.036998 0.755083 0.098176
 0.073621 0.815703 0.073063 0.037614
 0.088954 0.036998 0.036998 0.837051
 0.960405 0.000991 0.036998 0.001607

MOTIF 2-TATTTAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.077963 0.042977 0.001151 0.877910
 0.954006 0.042977 0.001151 0.001866
 0.001866 0.001151 0.001151 0.995832
 0.169981 0.001151 0.102613 0.726255
 0.072215 0.001151 0.001151 0.925483
 0.995832 0.001151 0.001151 0.001866
 0.001866 0.001151 0.995117 0.001866
 0.779027 0.001151 0.042977 0.176846

MOTIF 3-AATGCCAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 5.0e-001
 0.827453 0.029800 0.104035 0.038712
 0.830304 0.035340 0.124875 0.009481
 0.018039 0.062655 0.091953 0.827353
 0.174425 0.041982 0.686972 0.096621
 0.041326 0.871319 0.000569 0.086786
 0.017461 0.946083 0.004523 0.031932
 0.682039 0.062688 0.142025 0.113248
 0.038535 0.000569 0.052319 0.908578

MOTIF 4-AAATGAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 98 P= 7.3e-001
 0.921905 0.029829 0.045651 0.002614
 0.821982 0.146893 0.000799 0.030326
 0.881310 0.043350 0.050819 0.024520
 0.006073 0.015314 0.049627 0.928986
 0.044688 0.026330 0.927687 0.001295
 0.911606 0.041626 0.016441 0.030326
 0.822839 0.000799 0.053616 0.122746
 0.040414 0.058954 0.034438 0.866195

MOTIF 5-TATACATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.028118 0.017336 0.017336 0.937209
 0.937209 0.017336 0.017336 0.028118
 0.028118 0.017336 0.017336 0.937209
 0.937209 0.017336 0.017336 0.028118
 0.028118 0.926427 0.017336 0.028118
 0.937209 0.017336 0.017336 0.028118
 0.028118 0.017336 0.017336 0.937209
 0.937209 0.017336 0.017336 0.028118

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/br.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_br/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.87 seconds
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