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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-AGGTTAKG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 160 P= 1.5e-005
 0.946121 0.000232 0.053360 0.000287
 0.000287 0.000232 0.999194 0.000287
 0.000287 0.000232 0.999194 0.000287
 0.000287 0.000232 0.000232 0.999248
 0.000287 0.000232 0.000232 0.999248
 0.999248 0.000232 0.000232 0.000287
 0.110065 0.021930 0.419133 0.448871
 0.220515 0.000232 0.735067 0.044186

MOTIF 2-AATGGAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 3.0e-001
 0.906505 0.001199 0.038324 0.053973
 0.884629 0.001199 0.038324 0.075849
 0.001479 0.001199 0.016567 0.980755
 0.095733 0.075568 0.811851 0.016848
 0.029323 0.038383 0.893689 0.038604
 0.835874 0.150418 0.012228 0.001479
 0.869380 0.090817 0.001199 0.038604
 0.020042 0.075568 0.112933 0.791457

MOTIF 3-ATTTGTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.0e-001
 0.920429 0.027655 0.049987 0.001930
 0.147669 0.001563 0.049987 0.800780
 0.098933 0.049987 0.001563 0.849517
 0.050353 0.001563 0.001563 0.946520
 0.001930 0.021609 0.974532 0.001930
 0.001930 0.001563 0.049987 0.946520
 0.974898 0.021609 0.001563 0.001930
 0.601397 0.119031 0.083009 0.196563

MOTIF 4-BCAGCTGV STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 9.5e-001
 0.130904 0.249949 0.274494 0.344653
 0.001121 0.996850 0.000908 0.001121
 0.997062 0.000908 0.000908 0.001121
 0.175992 0.000908 0.765668 0.057432
 0.057432 0.765668 0.000908 0.175992
 0.001121 0.000908 0.000908 0.997062
 0.001121 0.000908 0.996850 0.001121
 0.344653 0.274494 0.249949 0.130904

MOTIF 5-ATTTTGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 1.0e+000
 0.933451 0.001019 0.064271 0.001258
 0.001258 0.001019 0.190775 0.806948
 0.001258 0.032595 0.032595 0.933553
 0.064510 0.239465 0.001019 0.695005
 0.001258 0.001019 0.032595 0.965128
 0.109429 0.001019 0.888293 0.001258
 0.001258 0.001019 0.684071 0.313651
 0.054366 0.064271 0.791083 0.090280

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/bigmax.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_bigmax/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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