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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.329 C 0.172 G 0.172 T 0.329 

MOTIF 1-ACAAMTTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.994622 0.001373 0.001373 0.002631
 0.002631 0.993365 0.001373 0.002631
 0.734547 0.001373 0.112573 0.151507
 0.883423 0.001373 0.001373 0.113830
 0.415105 0.557911 0.024353 0.002631
 0.002631 0.001373 0.056884 0.939112
 0.002631 0.001373 0.001373 0.994622
 0.994622 0.001373 0.001373 0.002631

MOTIF 2-GGTCACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.029864 0.015591 0.924682 0.029864
 0.029864 0.015591 0.924682 0.029864
 0.029864 0.015591 0.015591 0.938955
 0.029864 0.924682 0.015591 0.029864
 0.938955 0.015591 0.015591 0.029864
 0.029864 0.924682 0.015591 0.029864
 0.938955 0.015591 0.015591 0.029864
 0.029864 0.924682 0.015591 0.029864

MOTIF 3-AAATATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 87 P= 5.0e-001
 0.877773 0.020813 0.029001 0.072413
 0.939894 0.000981 0.020813 0.038311
 0.907508 0.036628 0.000981 0.054882
 0.001880 0.036553 0.000981 0.960586
 0.960586 0.000981 0.036553 0.001880
 0.054882 0.000981 0.036628 0.907508
 0.038311 0.020813 0.000981 0.939894
 0.072413 0.029001 0.020813 0.877773

MOTIF 4-AAACTTCW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.8e-001
 0.844452 0.151937 0.001239 0.002373
 0.874279 0.051310 0.051310 0.023101
 0.796745 0.021967 0.028218 0.153071
 0.002373 0.994015 0.001239 0.002373
 0.052444 0.001239 0.021967 0.924350
 0.023101 0.001239 0.001239 0.974421
 0.002373 0.994015 0.001239 0.002373
 0.356291 0.001239 0.001239 0.641231

MOTIF 5-ATAYRTAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 9.1e-001
 0.995929 0.001040 0.001040 0.001991
 0.257298 0.001040 0.199085 0.542578
 0.995929 0.001040 0.001040 0.001991
 0.001991 0.499640 0.064133 0.434236
 0.434236 0.064133 0.499640 0.001991
 0.001991 0.001040 0.001040 0.995929
 0.542578 0.199085 0.001040 0.257298
 0.001991 0.001040 0.001040 0.995929

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/bcd.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_bcd/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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