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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.321 C 0.179 G 0.179 T 0.321 

MOTIF 1-AGAGAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.938245 0.016300 0.016300 0.029155
 0.029155 0.016300 0.925391 0.029155
 0.938245 0.016300 0.016300 0.029155
 0.029155 0.016300 0.925391 0.029155
 0.938245 0.016300 0.016300 0.029155
 0.938245 0.016300 0.016300 0.029155
 0.938245 0.016300 0.016300 0.029155
 0.938245 0.016300 0.016300 0.029155

MOTIF 2-AAACATTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 7.7e-001
 0.828464 0.013097 0.064631 0.093808
 0.887546 0.044474 0.011595 0.056385
 0.848340 0.011321 0.007136 0.133203
 0.001220 0.851428 0.019512 0.127840
 0.947437 0.021046 0.000682 0.030835
 0.010900 0.068453 0.003077 0.917570
 0.032258 0.027086 0.008952 0.931704
 0.010485 0.003103 0.041411 0.945002

MOTIF 3-ACAGTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.989328 0.002817 0.002817 0.005038
 0.005038 0.987107 0.002817 0.005038
 0.553044 0.220959 0.220959 0.005038
 0.005038 0.002817 0.987107 0.005038
 0.005038 0.002817 0.002817 0.989328
 0.005038 0.002817 0.987107 0.005038
 0.005038 0.987107 0.002817 0.005038
 0.989328 0.002817 0.002817 0.005038

MOTIF 4-AAATAAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.0e+000
 0.966781 0.000783 0.031037 0.001400
 0.875921 0.031037 0.031037 0.062006
 0.870746 0.091838 0.005762 0.031654
 0.001400 0.013438 0.061389 0.923774
 0.863038 0.074174 0.061389 0.001400
 0.853851 0.000783 0.091838 0.053529
 0.001400 0.000783 0.923620 0.074198
 0.824348 0.122584 0.000783 0.052286

MOTIF 5-GTTAAGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.002282 0.001276 0.994160 0.002282
 0.160793 0.001276 0.001276 0.836655
 0.051609 0.100088 0.001276 0.847027
 0.896513 0.001276 0.050603 0.051609
 0.813389 0.001276 0.100088 0.085247
 0.002282 0.001276 0.944833 0.051609
 0.002282 0.984725 0.010711 0.002282
 0.896354 0.100088 0.001276 0.002282

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/bab2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_bab2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.92 seconds
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