********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.271 C 0.229 G 0.229 T 0.271 

MOTIF 1-CGGCAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 4.8e-003
 0.331859 0.666577 0.000717 0.000847
 0.025973 0.022400 0.950779 0.000847
 0.000847 0.044154 0.954152 0.000847
 0.306591 0.661185 0.022400 0.009824
 0.997719 0.000717 0.000717 0.000847
 0.908355 0.000717 0.046714 0.044215
 0.847660 0.150776 0.000717 0.000847
 0.044284 0.257163 0.130215 0.568338

MOTIF 2-AAATRAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 1.4e-001
 0.996073 0.001234 0.001234 0.001459
 0.712323 0.284985 0.001234 0.001459
 0.996073 0.001234 0.001234 0.001459
 0.001459 0.001234 0.001234 0.996073
 0.487778 0.151281 0.359482 0.001459
 0.996073 0.001234 0.001234 0.001459
 0.996073 0.001234 0.001234 0.001459
 0.996073 0.001234 0.001234 0.001459

MOTIF 3-GATGAGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 94 P= 2.3e-001
 0.069917 0.012297 0.845821 0.071965
 0.803956 0.062228 0.056943 0.076874
 0.167099 0.133350 0.030446 0.669105
 0.060061 0.041033 0.852874 0.046032
 0.773859 0.135373 0.022899 0.067869
 0.062376 0.121096 0.680582 0.135946
 0.062396 0.014574 0.865056 0.057974
 0.790794 0.065936 0.092310 0.050960

MOTIF 4-AAGTATGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.935633 0.001925 0.001925 0.060517
 0.818964 0.060166 0.001925 0.118945
 0.002276 0.060166 0.935282 0.002276
 0.236369 0.001925 0.001925 0.759781
 0.935633 0.060166 0.001925 0.002276
 0.060517 0.001925 0.118594 0.818964
 0.002276 0.001925 0.935282 0.060517
 0.060517 0.877041 0.001925 0.060517

MOTIF 5-GCCATAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 7.9e-001
 0.000931 0.158840 0.839297 0.000931
 0.000931 0.997350 0.000787 0.000931
 0.119166 0.831392 0.000787 0.048655
 0.901969 0.024611 0.072488 0.000931
 0.000931 0.000787 0.000787 0.997494
 0.750412 0.027501 0.028393 0.193694
 0.949847 0.024611 0.024611 0.000931
 0.912425 0.062033 0.024611 0.000931

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/abd-A.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_abd-A/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.70 seconds
********************************************************************************