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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.284 C 0.216 G 0.216 T 0.284 

MOTIF 1-GAAAACRA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.0e-001
 0.001261 0.000959 0.996520 0.001261
 0.996821 0.000959 0.000959 0.001261
 0.650411 0.000959 0.031735 0.316894
 0.805885 0.000959 0.031735 0.161421
 0.996821 0.000959 0.000959 0.001261
 0.001261 0.996520 0.000959 0.001261
 0.613017 0.000959 0.384763 0.001261
 0.700023 0.000959 0.000959 0.298058

MOTIF 2-ACGGTCAH STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.851817 0.143109 0.002193 0.002881
 0.002881 0.921700 0.002193 0.073226
 0.002881 0.002193 0.992045 0.002881
 0.002881 0.002193 0.992045 0.002881
 0.002881 0.002193 0.002193 0.992733
 0.002881 0.992045 0.002193 0.002881
 0.922388 0.072538 0.002193 0.002881
 0.354831 0.428380 0.002193 0.214596

MOTIF 3-AAGAAGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.955564 0.001256 0.041530 0.001650
 0.794335 0.081935 0.081805 0.041924
 0.001650 0.001256 0.995445 0.001650
 0.915289 0.001256 0.041530 0.041924
 0.809886 0.041530 0.098955 0.049628
 0.001650 0.001256 0.995445 0.001650
 0.592441 0.082065 0.041530 0.283963
 0.995839 0.001256 0.001256 0.001650

MOTIF 4-AACGCAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 8.3e-001
 0.927888 0.001482 0.049009 0.021621
 0.995090 0.001482 0.001482 0.001947
 0.001947 0.994625 0.001482 0.001947
 0.001947 0.096689 0.756376 0.144988
 0.001947 0.947098 0.001482 0.049474
 0.995090 0.001482 0.001482 0.001947
 0.832270 0.001482 0.049009 0.117239
 0.660786 0.001482 0.192512 0.145220

MOTIF 5-AAMTAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 9.1e-001
 0.995098 0.001479 0.001479 0.001944
 0.995098 0.001479 0.001479 0.001944
 0.580250 0.416327 0.001479 0.001944
 0.001944 0.001479 0.001479 0.995098
 0.995098 0.001479 0.001479 0.001944
 0.756215 0.001479 0.240362 0.001944
 0.618796 0.001479 0.169864 0.209861
 0.995098 0.001479 0.001479 0.001944

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/YL-1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_YL-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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