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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-ATCGATAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 4.9e-002
 0.658243 0.000630 0.159002 0.182125
 0.000998 0.090993 0.000630 0.907379
 0.000998 0.997374 0.000630 0.000998
 0.137164 0.045848 0.815990 0.000998
 0.703717 0.000630 0.158783 0.136870
 0.000998 0.000630 0.000630 0.997742
 0.845042 0.050165 0.013285 0.091507
 0.068709 0.000630 0.929662 0.000998

MOTIF 2-CACGTCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.5e-002
 0.029916 0.968017 0.000800 0.001267
 0.997134 0.000800 0.000800 0.001267
 0.001267 0.996667 0.000800 0.001267
 0.029916 0.000800 0.939368 0.029916
 0.001267 0.000800 0.000800 0.997134
 0.001267 0.968017 0.000800 0.029916
 0.968484 0.000800 0.000800 0.029916
 0.116419 0.242882 0.523857 0.116842

MOTIF 3-GCCACCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 7.0e-001
 0.002847 0.021509 0.932871 0.042774
 0.064003 0.913564 0.000584 0.021850
 0.021850 0.976641 0.000584 0.000925
 0.935133 0.021509 0.021509 0.021850
 0.021850 0.828386 0.042500 0.107265
 0.042841 0.850588 0.084687 0.021883
 0.000925 0.000584 0.021509 0.976982
 0.871681 0.000584 0.084961 0.042774

MOTIF 4-AGTGWTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.995054 0.001380 0.001380 0.002186
 0.002186 0.001380 0.944813 0.051621
 0.200646 0.001380 0.199840 0.598134
 0.002186 0.001380 0.994248 0.002186
 0.448700 0.001380 0.001380 0.548540
 0.002186 0.050815 0.001380 0.945619
 0.002186 0.001380 0.994248 0.002186
 0.101216 0.001380 0.895218 0.002186

MOTIF 5-AGTTTAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.909948 0.001195 0.001195 0.087662
 0.044777 0.044011 0.909319 0.001893
 0.044709 0.001195 0.001195 0.952901
 0.044709 0.001195 0.018919 0.935177
 0.049902 0.044011 0.001195 0.904892
 0.926982 0.001195 0.044011 0.027812
 0.909948 0.001195 0.086964 0.001893
 0.001893 0.173286 0.694067 0.130753

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Xbp1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Xbp1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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