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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-ATWTGCAW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 1.2e-001
 0.996734 0.001060 0.001060 0.001146
 0.001146 0.001060 0.248949 0.748845
 0.367879 0.095790 0.001060 0.535271
 0.001146 0.031642 0.001060 0.966152
 0.001146 0.001060 0.996648 0.001146
 0.001146 0.752641 0.001060 0.245153
 0.960302 0.001060 0.001060 0.037578
 0.531662 0.013720 0.001060 0.453558

MOTIF 2-GCTAATTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 94 P= 2.5e-001
 0.007490 0.000403 0.968295 0.023812
 0.000436 0.987037 0.012091 0.000436
 0.000436 0.130882 0.000403 0.868279
 0.975382 0.000403 0.023779 0.000436
 0.998758 0.000403 0.000403 0.000436
 0.000436 0.000403 0.000403 0.998758
 0.090602 0.094250 0.023704 0.791445
 0.735108 0.000403 0.016761 0.247728

MOTIF 3-AGGGGAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.0e-001
 0.945070 0.001064 0.001064 0.052801
 0.017697 0.123998 0.857154 0.001151
 0.001151 0.001064 0.944983 0.052801
 0.175933 0.001064 0.615590 0.207413
 0.001151 0.013777 0.953213 0.031860
 0.919850 0.077935 0.001064 0.001151
 0.801195 0.001064 0.165881 0.031860
 0.062270 0.031773 0.843191 0.062766

MOTIF 4-AACCGGTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 5.0e-001
 0.952587 0.000779 0.023276 0.023358
 0.963845 0.034534 0.000779 0.000843
 0.000843 0.963781 0.012018 0.023358
 0.057404 0.522206 0.159910 0.260480
 0.260480 0.159910 0.522206 0.057404
 0.023358 0.012018 0.963781 0.000843
 0.000843 0.000779 0.034534 0.963845
 0.023358 0.023276 0.000779 0.952587

MOTIF 5-AATTTAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.0e-001
 0.659609 0.087592 0.108377 0.144423
 0.817627 0.108377 0.072662 0.001334
 0.001334 0.010824 0.036833 0.951008
 0.036934 0.001234 0.001234 0.960599
 0.001334 0.001234 0.001234 0.996198
 0.919525 0.001234 0.077907 0.001334
 0.853110 0.144322 0.001234 0.001334
 0.001334 0.001234 0.001234 0.996198

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Vsx2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Vsx2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	2.28 seconds
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