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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.211 G 0.211 T 0.288 

MOTIF 1-GCTAATTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 185 P= 8.3e-005
 0.043165 0.013409 0.943071 0.000354
 0.000354 0.999032 0.000260 0.000354
 0.011799 0.140736 0.000260 0.847205
 0.999126 0.000260 0.000260 0.000354
 0.969969 0.020906 0.000260 0.008865
 0.000354 0.000260 0.000260 0.999126
 0.063551 0.107756 0.072242 0.756452
 0.830548 0.005934 0.046379 0.117139

MOTIF 2-CTTATCGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 1.2e-001
 0.001348 0.941834 0.055469 0.001348
 0.007544 0.000988 0.000988 0.990480
 0.060281 0.033380 0.000988 0.905351
 0.931892 0.033380 0.033380 0.001348
 0.014757 0.000988 0.014397 0.969857
 0.033740 0.963924 0.000988 0.001348
 0.197275 0.014397 0.786979 0.001348
 0.131754 0.590409 0.263079 0.014757

MOTIF 3-ACAAACAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 5.0e-001
 0.697145 0.000443 0.155299 0.147113
 0.000604 0.992341 0.006451 0.000604
 0.766723 0.159663 0.058497 0.015118
 0.693847 0.012130 0.121426 0.172596
 0.811773 0.114240 0.000443 0.073543
 0.000604 0.843751 0.079190 0.076455
 0.791499 0.122698 0.006451 0.079351
 0.000604 0.793129 0.108138 0.098128

MOTIF 4-CATTTCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 8.3e-001
 0.001526 0.995829 0.001119 0.001526
 0.843926 0.037787 0.037787 0.080500
 0.038194 0.148501 0.037787 0.775519
 0.074980 0.001119 0.037787 0.886115
 0.016705 0.016298 0.001119 0.965878
 0.001526 0.885292 0.111655 0.001526
 0.812543 0.074572 0.074691 0.038194
 0.870936 0.016298 0.074572 0.038194

MOTIF 5-CTTCGTCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.002555 0.808277 0.001873 0.187295
 0.002555 0.001873 0.070701 0.924871
 0.186702 0.001873 0.001873 0.809552
 0.002555 0.993017 0.001873 0.002555
 0.002555 0.001873 0.993017 0.002555
 0.125319 0.001873 0.001873 0.870935
 0.002555 0.993017 0.001873 0.002555
 0.186899 0.063255 0.501168 0.248678

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Vsx1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Vsx1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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