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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.333 C 0.167 G 0.167 T 0.333 

MOTIF 1-CGACACTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.002667 0.882107 0.001338 0.113888
 0.282072 0.056860 0.658401 0.002667
 0.883613 0.001338 0.056860 0.058188
 0.058188 0.937807 0.001338 0.002667
 0.828092 0.056860 0.001338 0.113710
 0.002667 0.947360 0.024323 0.025651
 0.113710 0.001338 0.056860 0.828092
 0.002667 0.001338 0.993328 0.002667

MOTIF 2-AAGAACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.773338 0.045520 0.134559 0.046583
 0.995722 0.001072 0.001072 0.002135
 0.002135 0.045520 0.950211 0.002135
 0.773051 0.045520 0.001072 0.180357
 0.951274 0.045520 0.001072 0.002135
 0.106318 0.866526 0.025021 0.002135
 0.951274 0.001072 0.045520 0.002135
 0.002135 0.886836 0.108895 0.002135

MOTIF 3-AWTGCTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.994321 0.001422 0.001422 0.002834
 0.476201 0.060427 0.001422 0.461950
 0.120842 0.001422 0.060427 0.817309
 0.002834 0.001422 0.992910 0.002834
 0.161080 0.834664 0.001422 0.002834
 0.220274 0.001422 0.025848 0.752455
 0.002834 0.001422 0.992910 0.002834
 0.994321 0.001422 0.001422 0.002834

MOTIF 4-AACTATTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.767051 0.001101 0.229654 0.002194
 0.918770 0.001101 0.001101 0.079027
 0.002194 0.994511 0.001101 0.002194
 0.002194 0.001101 0.092464 0.904241
 0.674803 0.321902 0.001101 0.002194
 0.047875 0.001101 0.001101 0.949922
 0.002194 0.321458 0.001101 0.675247
 0.002194 0.001101 0.994511 0.002194

MOTIF 5-CAAATACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.064180 0.880032 0.046147 0.009641
 0.915416 0.000971 0.081678 0.001935
 0.834578 0.122227 0.041260 0.001935
 0.996123 0.000971 0.000971 0.001935
 0.123190 0.041260 0.122227 0.713323
 0.946088 0.017649 0.017649 0.018613
 0.042224 0.942901 0.000971 0.013904
 0.123387 0.760119 0.041260 0.075235

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Usf.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Usf/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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