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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.274 C 0.226 G 0.226 T 0.274 

MOTIF 1-CTTTCTAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 3.3e-001
 0.116918 0.809738 0.061371 0.011973
 0.042076 0.033767 0.028054 0.896104
 0.091799 0.035332 0.006164 0.866706
 0.144389 0.013064 0.041878 0.800669
 0.051197 0.874986 0.040713 0.033105
 0.067224 0.126168 0.168080 0.638527
 0.739369 0.097325 0.092032 0.071273
 0.043241 0.061504 0.028054 0.867201

MOTIF 2-GAGAGCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 133 P= 3.8e-001
 0.038255 0.042470 0.894127 0.025147
 0.950018 0.007880 0.025019 0.017084
 0.025225 0.010803 0.938825 0.025147
 0.919778 0.005670 0.000789 0.073763
 0.008545 0.024980 0.941289 0.025186
 0.000956 0.809300 0.114493 0.075251
 0.000956 0.000789 0.965264 0.032991
 0.909140 0.000789 0.071835 0.018236

MOTIF 3-CACSCACT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 5.0e-001
 0.001641 0.912321 0.042875 0.043163
 0.995651 0.001354 0.001354 0.001641
 0.001641 0.995364 0.001354 0.001641
 0.001641 0.314786 0.581208 0.102365
 0.126339 0.870666 0.001354 0.001641
 0.995651 0.001354 0.001354 0.001641
 0.001641 0.995364 0.001354 0.001641
 0.248924 0.105291 0.001354 0.644432

MOTIF 4-ACAGCTGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.799391 0.001880 0.030711 0.168018
 0.118350 0.877490 0.001880 0.002279
 0.982025 0.013815 0.001880 0.002279
 0.089051 0.030711 0.849127 0.031110
 0.031110 0.849127 0.030711 0.089051
 0.002279 0.001880 0.013815 0.982025
 0.002279 0.001880 0.877490 0.118350
 0.168018 0.030711 0.001880 0.799391

MOTIF 5-CTTGGCCM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.073175 0.921747 0.002295 0.002783
 0.002783 0.072688 0.002295 0.922235
 0.002783 0.002295 0.002295 0.992627
 0.073175 0.002295 0.921747 0.002783
 0.002783 0.002295 0.992140 0.002783
 0.073175 0.921747 0.002295 0.002783
 0.002783 0.992140 0.002295 0.002783
 0.429260 0.424877 0.072688 0.073175

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Trl.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Trl/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.54 seconds
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