********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.226 C 0.274 G 0.274 T 0.226 

MOTIF 1-CAGCTGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 2.1e-001
 0.000958 0.991309 0.001159 0.006573
 0.760833 0.001159 0.237049 0.000958
 0.051539 0.001159 0.910738 0.036564
 0.059717 0.628507 0.310818 0.000958
 0.000958 0.089653 0.207645 0.701744
 0.212441 0.001159 0.785441 0.000958
 0.000958 0.979157 0.001159 0.018726
 0.996723 0.001159 0.001159 0.000958

MOTIF 2-ACAARARC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 6.7e-001
 0.998120 0.000665 0.000665 0.000550
 0.000550 0.837911 0.000665 0.160874
 0.998120 0.000665 0.000665 0.000550
 0.852977 0.000665 0.128966 0.017391
 0.433473 0.142815 0.331874 0.091838
 0.667709 0.188994 0.048292 0.095005
 0.619371 0.051244 0.328836 0.000550
 0.000550 0.913864 0.085036 0.000550

MOTIF 3-AGGAGKCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 9.5e-001
 0.995092 0.001736 0.001736 0.001436
 0.001436 0.045709 0.951420 0.001436
 0.089522 0.001736 0.907306 0.001436
 0.841047 0.089822 0.023722 0.045408
 0.001436 0.089822 0.907306 0.001436
 0.133778 0.001736 0.312547 0.551939
 0.045408 0.951420 0.001736 0.001436
 0.001436 0.001736 0.995392 0.001436

MOTIF 4-GCCACCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 9.8e-001
 0.096053 0.030609 0.872478 0.000861
 0.000861 0.986321 0.001041 0.011777
 0.000861 0.944414 0.001041 0.053684
 0.778930 0.045392 0.107028 0.068650
 0.000861 0.997237 0.001041 0.000861
 0.080223 0.904691 0.014226 0.000861
 0.919511 0.001041 0.025764 0.053684
 0.027230 0.864709 0.107200 0.000861

MOTIF 5-CATCGTCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.001897 0.993911 0.002295 0.001897
 0.818324 0.177484 0.002295 0.001897
 0.118314 0.002295 0.002295 0.877096
 0.060012 0.935796 0.002295 0.001897
 0.001897 0.002295 0.993911 0.001897
 0.001897 0.002295 0.002295 0.993513
 0.294354 0.701454 0.002295 0.001897
 0.176804 0.002295 0.760889 0.060012

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar3-9.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Suvar3-9/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n12.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.56 seconds
********************************************************************************