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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.291 C 0.209 G 0.209 T 0.291 

MOTIF 1-AAAYRTTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 92 P= 1.9e-001
 0.783506 0.091061 0.011971 0.113462
 0.786816 0.000681 0.082239 0.130265
 0.931252 0.000681 0.067120 0.000948
 0.000948 0.489778 0.007010 0.502264
 0.502264 0.007010 0.489778 0.000948
 0.000948 0.067120 0.000681 0.931252
 0.130265 0.082239 0.000681 0.786816
 0.113462 0.011971 0.091061 0.783506

MOTIF 2-GGCTCTAD STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 2.4e-001
 0.001565 0.001124 0.995747 0.001565
 0.166066 0.203013 0.554819 0.076101
 0.001565 0.614048 0.165625 0.218762
 0.128798 0.001124 0.001124 0.868955
 0.001565 0.995747 0.001124 0.001565
 0.001565 0.001124 0.001124 0.996188
 0.996188 0.001124 0.001124 0.001565
 0.389676 0.001124 0.309008 0.300192

MOTIF 3-CCATCWCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.155464 0.840853 0.001539 0.002143
 0.002143 0.994174 0.001539 0.002143
 0.943726 0.001539 0.001539 0.053195
 0.002143 0.001539 0.001539 0.994778
 0.053195 0.943122 0.001539 0.002143
 0.513159 0.154860 0.052674 0.279308
 0.002143 0.943122 0.001539 0.053195
 0.155300 0.052592 0.052592 0.739517

MOTIF 4-GAAAGTTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.012475 0.000817 0.985570 0.001138
 0.882260 0.012037 0.039140 0.066563
 0.725938 0.082213 0.027920 0.163929
 0.904700 0.027920 0.055023 0.012358
 0.046723 0.055110 0.850330 0.047837
 0.039460 0.055110 0.163608 0.741821
 0.039460 0.109316 0.018886 0.832338
 0.966837 0.000817 0.000817 0.031528

MOTIF 5-GGGTCACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003743 0.002688 0.989825 0.003743
 0.182350 0.002688 0.811219 0.003743
 0.003743 0.002688 0.989825 0.003743
 0.003743 0.002688 0.002688 0.990880
 0.003743 0.989825 0.002688 0.003743
 0.901720 0.002688 0.002688 0.092903
 0.092903 0.900665 0.002688 0.003743
 0.003743 0.989825 0.002688 0.003743

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar3-7.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Suvar3-7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.86 seconds
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