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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-GCAGTGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002371 0.002021 0.993237 0.002371
 0.002371 0.993237 0.002021 0.002371
 0.871610 0.123997 0.002021 0.002371
 0.002371 0.002021 0.993237 0.002371
 0.002371 0.185281 0.002021 0.810327
 0.247509 0.002021 0.687209 0.063261
 0.002371 0.993237 0.002021 0.002371
 0.981940 0.002021 0.013668 0.002371

MOTIF 2-AGGAACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 7.6e-001
 0.954997 0.001352 0.042066 0.001585
 0.001585 0.001352 0.995478 0.001585
 0.106254 0.001352 0.890810 0.001585
 0.995712 0.001352 0.001352 0.001585
 0.702622 0.130795 0.164998 0.001585
 0.001585 0.995478 0.001352 0.001585
 0.124122 0.018206 0.021709 0.835963
 0.206475 0.001352 0.722109 0.070065

MOTIF 3-GACTCCAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.001949 0.001662 0.994439 0.001949
 0.944665 0.001662 0.001662 0.052011
 0.001949 0.994439 0.001662 0.001949
 0.001949 0.001662 0.001662 0.994727
 0.052011 0.844254 0.001662 0.102073
 0.001949 0.817119 0.001662 0.179270
 0.894442 0.101947 0.001662 0.001949
 0.211933 0.583886 0.202231 0.001949

MOTIF 4-GGTCACTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.8e-001
 0.002143 0.001827 0.993886 0.002143
 0.112411 0.001827 0.773350 0.112411
 0.002143 0.001827 0.056873 0.939156
 0.112411 0.773527 0.056873 0.057189
 0.994202 0.001827 0.001827 0.002143
 0.002143 0.773350 0.112095 0.112411
 0.057189 0.001827 0.001827 0.939156
 0.002143 0.001827 0.112095 0.883934

MOTIF 5-AAAGCGGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.859888 0.001496 0.001496 0.137120
 0.814815 0.046569 0.136861 0.001755
 0.588722 0.046569 0.227298 0.137410
 0.001755 0.046569 0.949920 0.001755
 0.001755 0.994994 0.001496 0.001755
 0.001755 0.001496 0.994994 0.001755
 0.137410 0.001496 0.859338 0.001755
 0.001755 0.091788 0.001496 0.904961

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar205.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Suvar205/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.87 seconds
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