********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.309 C 0.191 G 0.191 T 0.309 

MOTIF 1-GTTTACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 2.4e-001
 0.001383 0.062935 0.934299 0.001383
 0.001383 0.000852 0.000852 0.996912
 0.001383 0.000852 0.000852 0.996912
 0.063466 0.188310 0.031844 0.716381
 0.869564 0.018227 0.017551 0.094657
 0.001383 0.921469 0.062935 0.014213
 0.965921 0.000852 0.031844 0.001383
 0.283952 0.669991 0.031844 0.014213

MOTIF 2-TATYAGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 2.4e-001
 0.001742 0.001073 0.001073 0.996111
 0.918052 0.040103 0.040103 0.001742
 0.005326 0.040103 0.001073 0.953498
 0.067388 0.356932 0.001073 0.574607
 0.996111 0.001073 0.001073 0.001742
 0.001742 0.001073 0.995442 0.001742
 0.857867 0.022103 0.079258 0.040772
 0.159193 0.001073 0.040103 0.799631

MOTIF 3-CCGTTACK STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.001804 0.792652 0.082084 0.123459
 0.001804 0.995280 0.001111 0.001804
 0.001804 0.041533 0.938125 0.018537
 0.001804 0.001111 0.001111 0.995973
 0.001804 0.001111 0.001111 0.995973
 0.955551 0.041533 0.001111 0.001804
 0.082777 0.914307 0.001111 0.001804
 0.001804 0.041533 0.585704 0.370959

MOTIF 4-WATCGATW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.482673 0.017327 0.017327 0.482673
 0.937218 0.017327 0.017327 0.028127
 0.028127 0.017327 0.017327 0.937218
 0.028127 0.926418 0.017327 0.028127
 0.028127 0.017327 0.926418 0.028127
 0.937218 0.017327 0.017327 0.028127
 0.028127 0.017327 0.017327 0.937218
 0.482673 0.017327 0.017327 0.482673

MOTIF 5-TACATGTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.114647 0.057432 0.029438 0.798483
 0.966536 0.001535 0.001535 0.030395
 0.002491 0.833075 0.001535 0.162899
 0.910639 0.029438 0.001535 0.058388
 0.058388 0.001535 0.029438 0.910639
 0.162899 0.001535 0.833075 0.002491
 0.030395 0.001535 0.001535 0.966536
 0.798483 0.029438 0.057432 0.114647

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Suvar2-HP2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Suvar2-HP2/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n06.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.64 seconds
********************************************************************************