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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.366 C 0.134 G 0.134 T 0.366 

MOTIF 1-ATTTAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 9.5e-002
 0.994642 0.001133 0.001133 0.003092
 0.003092 0.001133 0.104606 0.891169
 0.003092 0.051589 0.001133 0.944187
 0.003092 0.001133 0.146464 0.849311
 0.849311 0.146464 0.001133 0.003092
 0.944187 0.001133 0.051589 0.003092
 0.891169 0.104606 0.001133 0.003092
 0.003092 0.001133 0.001133 0.994642

MOTIF 2-GMACTGTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.005766 0.002113 0.986355 0.005766
 0.334492 0.657629 0.002113 0.005766
 0.880785 0.002113 0.002113 0.114989
 0.005766 0.986355 0.002113 0.005766
 0.115165 0.002113 0.002113 0.880609
 0.005766 0.002113 0.986355 0.005766
 0.114989 0.111336 0.002113 0.771561
 0.005766 0.111336 0.877132 0.005766

MOTIF 3-CTCTCAGW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.057941 0.938089 0.001065 0.002905
 0.112976 0.001065 0.001065 0.884894
 0.002905 0.993125 0.001065 0.002905
 0.168189 0.001065 0.111136 0.719610
 0.223580 0.772450 0.001065 0.002905
 0.939930 0.001065 0.001065 0.057941
 0.113154 0.001065 0.882876 0.002905
 0.443900 0.056100 0.056100 0.443900

MOTIF 4-ATTTCTTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 9.7e-001
 0.795610 0.000554 0.144655 0.059181
 0.075126 0.029189 0.057915 0.837770
 0.011158 0.015983 0.000554 0.972306
 0.030146 0.016608 0.057915 0.895330
 0.001512 0.996423 0.000554 0.001512
 0.053953 0.057915 0.033734 0.854397
 0.008499 0.029189 0.019644 0.942668
 0.903485 0.086735 0.008268 0.001512

MOTIF 5-GCTGATAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.004339 0.001590 0.989732 0.004339
 0.251706 0.742366 0.001590 0.004339
 0.004339 0.001590 0.001590 0.992481
 0.004339 0.001590 0.989732 0.004339
 0.745114 0.001590 0.001590 0.251706
 0.004339 0.001590 0.001590 0.992481
 0.828100 0.001590 0.083781 0.086529
 0.745645 0.001590 0.083781 0.168984

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ssrp.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Ssrp/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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