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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.33 C 0.17 G 0.17 T 0.33 

MOTIF 1-AGCYAGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 5.5e-002
 0.932177 0.066146 0.000570 0.001107
 0.001107 0.047088 0.911577 0.040227
 0.024366 0.810845 0.163682 0.001107
 0.001107 0.644125 0.000570 0.354198
 0.904492 0.093831 0.000570 0.001107
 0.001107 0.000570 0.997215 0.001107
 0.631840 0.232314 0.074945 0.060901
 0.001107 0.012200 0.000570 0.986122

MOTIF 2-CAKCACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 75 P= 2.1e-001
 0.000690 0.969229 0.000355 0.029726
 0.984104 0.014850 0.000355 0.000690
 0.117970 0.014850 0.380055 0.487125
 0.000690 0.992264 0.000355 0.006690
 0.852972 0.014850 0.029391 0.102787
 0.006690 0.977769 0.000355 0.015185
 0.044314 0.029345 0.006356 0.919986
 0.013437 0.000355 0.927258 0.058949

MOTIF 3-ATTCAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.939091 0.015455 0.015455 0.030000
 0.030000 0.015455 0.015455 0.939091
 0.030000 0.015455 0.015455 0.939091
 0.030000 0.924545 0.015455 0.030000
 0.939091 0.015455 0.015455 0.030000
 0.939091 0.015455 0.015455 0.030000
 0.939091 0.015455 0.015455 0.030000
 0.030000 0.015455 0.015455 0.939091

MOTIF 4-AAATAGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.930931 0.000952 0.000952 0.067164
 0.957413 0.000952 0.039786 0.001849
 0.762369 0.000952 0.157038 0.079640
 0.001849 0.000952 0.000952 0.996246
 0.957413 0.039786 0.000952 0.001849
 0.001849 0.078744 0.917559 0.001849
 0.067164 0.930035 0.000952 0.001849
 0.001849 0.995350 0.000952 0.001849

MOTIF 5-ATATATAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 8.3e-001
 0.939091 0.015455 0.015455 0.030000
 0.030000 0.015455 0.015455 0.939091
 0.939091 0.015455 0.015455 0.030000
 0.030000 0.015455 0.015455 0.939091
 0.939091 0.015455 0.015455 0.030000
 0.030000 0.015455 0.015455 0.939091
 0.939091 0.015455 0.015455 0.030000
 0.030000 0.015455 0.015455 0.939091

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sry-β.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Sry-β/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.89 seconds
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