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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.349 C 0.151 G 0.151 T 0.349 

MOTIF 1-AAGATACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.940818 0.013727 0.013727 0.031727
 0.940818 0.013727 0.013727 0.031727
 0.031727 0.013727 0.922818 0.031727
 0.940818 0.013727 0.013727 0.031727
 0.031727 0.013727 0.013727 0.940818
 0.940818 0.013727 0.013727 0.031727
 0.031727 0.922818 0.013727 0.031727
 0.940818 0.013727 0.013727 0.031727

MOTIF 2-ACAATAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 6.4e-001
 0.851761 0.063287 0.008574 0.076377
 0.032271 0.954398 0.000429 0.012903
 0.793855 0.010267 0.048810 0.147067
 0.826558 0.020106 0.020106 0.133230
 0.013680 0.084051 0.000429 0.901840
 0.850378 0.059460 0.047929 0.042233
 0.833946 0.023870 0.000429 0.141755
 0.107238 0.732549 0.020138 0.140076

MOTIF 3-GCCACCGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.0e-001
 0.087945 0.087486 0.670797 0.153772
 0.129645 0.756548 0.048631 0.065176
 0.143014 0.768742 0.039179 0.049065
 0.798708 0.032520 0.087486 0.081286
 0.113456 0.775401 0.032624 0.078519
 0.081338 0.757932 0.024478 0.136252
 0.136252 0.016435 0.791590 0.055723
 0.814845 0.071349 0.064742 0.049065

MOTIF 4-AACGAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.0e+000
 0.873206 0.093667 0.031571 0.001556
 0.997098 0.000673 0.000673 0.001556
 0.001556 0.996215 0.000673 0.001556
 0.001556 0.000673 0.714033 0.283739
 0.966200 0.000673 0.031571 0.001556
 0.904304 0.062569 0.031571 0.001556
 0.842308 0.031571 0.031571 0.094549
 0.001556 0.062669 0.062769 0.873006

MOTIF 5-CCTTTACT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.059689 0.879383 0.001238 0.059689
 0.059689 0.879383 0.001238 0.059689
 0.026386 0.001238 0.001238 0.971138
 0.002861 0.001238 0.001238 0.994663
 0.059689 0.001238 0.001238 0.937835
 0.823629 0.001238 0.001238 0.173895
 0.173895 0.822006 0.001238 0.002861
 0.231275 0.058066 0.001238 0.709421

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sp1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Sp1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	2.98 seconds
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