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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.341 C 0.159 G 0.159 T 0.341 

MOTIF 1-AGCTTGKA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.922733 0.001623 0.072178 0.003467
 0.003467 0.001623 0.991444 0.003467
 0.003467 0.991444 0.001623 0.003467
 0.003467 0.072178 0.001623 0.922733
 0.003467 0.001623 0.072178 0.922733
 0.003467 0.001623 0.991444 0.003467
 0.003467 0.001623 0.637300 0.357610
 0.569275 0.284525 0.072178 0.074022

MOTIF 2-GTACATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.002766 0.001294 0.993174 0.002766
 0.139297 0.001294 0.001294 0.858114
 0.994646 0.001294 0.001294 0.002766
 0.002766 0.993174 0.001294 0.002766
 0.825254 0.001294 0.001294 0.172158
 0.002766 0.001294 0.057577 0.938363
 0.938363 0.001294 0.057577 0.002766
 0.542475 0.170961 0.057577 0.228987

MOTIF 3-ATACATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 9.3e-001
 0.718608 0.104375 0.063096 0.113921
 0.001977 0.068607 0.008622 0.920793
 0.918013 0.004620 0.000925 0.076441
 0.001977 0.995120 0.000925 0.001977
 0.939274 0.017583 0.041166 0.001977
 0.002191 0.089361 0.004620 0.903828
 0.058831 0.017583 0.041166 0.882420
 0.024538 0.017583 0.081535 0.876343

MOTIF 4-GAATTTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 9.3e-001
 0.001018 0.050756 0.898625 0.049601
 0.983291 0.000477 0.009057 0.007176
 0.714887 0.112690 0.129917 0.042505
 0.082873 0.162724 0.049565 0.704838
 0.084390 0.153125 0.041930 0.720555
 0.083959 0.123120 0.004441 0.788480
 0.122907 0.000477 0.875597 0.001018
 0.956575 0.000477 0.021203 0.021745

MOTIF 5-AACGACTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 9.7e-001
 0.981306 0.016046 0.000844 0.001804
 0.959786 0.000844 0.000844 0.038525
 0.130774 0.756297 0.111124 0.001804
 0.167495 0.000844 0.829856 0.001804
 0.996507 0.000844 0.000844 0.001804
 0.001804 0.840825 0.037565 0.119806
 0.186119 0.037565 0.111006 0.665310
 0.053726 0.037565 0.037565 0.871144

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sox15.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Sox15/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.56 seconds
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