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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.316 C 0.184 G 0.184 T 0.316 

MOTIF 1-GCCAGACG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.028709 0.016745 0.925836 0.028709
 0.028709 0.925836 0.016745 0.028709
 0.028709 0.925836 0.016745 0.028709
 0.937800 0.016745 0.016745 0.028709
 0.028709 0.016745 0.925836 0.028709
 0.937800 0.016745 0.016745 0.028709
 0.028709 0.925836 0.016745 0.028709
 0.028709 0.016745 0.925836 0.028709

MOTIF 2-ATMAAATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001
 0.992618 0.001987 0.001987 0.003407
 0.003407 0.001987 0.001987 0.992618
 0.615063 0.379543 0.001987 0.003407
 0.992618 0.001987 0.001987 0.003407
 0.839692 0.117523 0.039378 0.003407
 0.917837 0.076769 0.001987 0.003407
 0.003407 0.001987 0.001987 0.992618
 0.992618 0.001987 0.001987 0.003407

MOTIF 3-AGCTACAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 9.7e-001
 0.908373 0.086918 0.000763 0.003945
 0.116459 0.000763 0.792560 0.090218
 0.049611 0.819048 0.029481 0.101860
 0.139614 0.000763 0.087196 0.772427
 0.924163 0.058292 0.016237 0.001308
 0.015668 0.945806 0.029481 0.009045
 0.705660 0.012652 0.041370 0.240318
 0.812591 0.024540 0.058292 0.104577

MOTIF 4-AACTAAAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.937800 0.016745 0.016745 0.028709
 0.937800 0.016745 0.016745 0.028709
 0.028709 0.925836 0.016745 0.028709
 0.028709 0.016745 0.016745 0.937800
 0.937800 0.016745 0.016745 0.028709
 0.937800 0.016745 0.016745 0.028709
 0.937800 0.016745 0.016745 0.028709
 0.028709 0.925836 0.016745 0.028709

MOTIF 5-CTTGATTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.042614 0.855577 0.099952 0.001857
 0.042614 0.123748 0.041840 0.791798
 0.083502 0.021462 0.082728 0.812308
 0.001857 0.001083 0.995203 0.001857
 0.995977 0.001083 0.001083 0.001857
 0.083634 0.001083 0.017955 0.897328
 0.042614 0.001083 0.041840 0.914463
 0.001857 0.001083 0.123748 0.873312

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Snoo.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Snoo/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.71 seconds
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