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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.35 C 0.15 G 0.15 T 0.35 

MOTIF 1-ATCTAAAK STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 5.0e-001
 0.710306 0.161704 0.126206 0.001785
 0.001785 0.000768 0.000768 0.996680
 0.001785 0.995663 0.000768 0.001785
 0.001785 0.000768 0.000768 0.996680
 0.916264 0.081183 0.000768 0.001785
 0.638328 0.289803 0.000768 0.071101
 0.996680 0.000768 0.000768 0.001785
 0.235643 0.000768 0.273440 0.490149

MOTIF 2-ATTTGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 9.9e-001
 0.993280 0.001554 0.001554 0.003612
 0.003612 0.001554 0.001554 0.993280
 0.003612 0.001554 0.001554 0.993280
 0.083918 0.001554 0.001554 0.912974
 0.003612 0.001554 0.991222 0.003612
 0.839029 0.001554 0.001554 0.157863
 0.839029 0.001554 0.001554 0.157863
 0.993280 0.001554 0.001554 0.003612

MOTIF 3-AGGCAGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.840537 0.001650 0.001650 0.156163
 0.003835 0.001650 0.990679 0.003835
 0.079877 0.077692 0.838596 0.003835
 0.079877 0.762555 0.077692 0.079877
 0.992865 0.001650 0.001650 0.003835
 0.003835 0.077692 0.838596 0.079877
 0.916823 0.001650 0.077692 0.003835
 0.916823 0.077692 0.001650 0.003835

MOTIF 4-AAAGATAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.940873 0.013673 0.013673 0.031782
 0.940873 0.013673 0.013673 0.031782
 0.940873 0.013673 0.013673 0.031782
 0.031782 0.013673 0.922764 0.031782
 0.940873 0.013673 0.013673 0.031782
 0.031782 0.013673 0.013673 0.940873
 0.940873 0.013673 0.013673 0.031782
 0.031782 0.922764 0.013673 0.031782

MOTIF 5-AAACTAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.957351 0.006596 0.003516 0.032536
 0.896313 0.013494 0.013494 0.076699
 0.912755 0.009874 0.075809 0.001562
 0.001562 0.996204 0.000672 0.001562
 0.100064 0.093893 0.000672 0.805371
 0.962021 0.031646 0.000672 0.005661
 0.924493 0.000672 0.000672 0.074163
 0.011887 0.006596 0.251290 0.730227

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Smox.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Smox/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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